Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3932 ATGAGTGACTCATTGGCAAGTGATAATAATCAACTTCATGATTCCCCAGCCGTTGATATAACCGGCAAGATCATGGTGGTCATCATCATTCTTCTCTTCATGGTTATTGTTACTTTTCTTTTCTTCCATCTTTTTGCCAAGGGATTCTGGTGGACTCAGAGTCGGAGGAGCAGTGACAACAATTCCCAATCCCGAAGGCGCCGGCGTAGTGGTCAAGAGGGTGGTGGTCTTGATCCTTCCGTACTCAACTCCCTACCCATATCAATATTCAATTCAAAAGAAGATGGTTTTGATTTGGAGTGTTCAGTTTGCCTGTCGGAAGTGGTTGAAGGAGAAAAGGTGAGGGTTTTGCCTAAATGCAATCACATGTTTCACATAGATTGCATTGATATGTGGTTCCATTCCCACTCAACCTGCCCTCTTTGCAGGACAACACTTGCTGCAACTCCTCCTCCCTCCTCAGTAGTAGTAGTAGTAGACATAGAATCATCAACATCTGCTGCTGCTGCTGCTGCTGCTTTTCCCACAAATGTCTTGATTTGGGGCAACCACAACCAAATAACCTCTTCTTCTTCATCTACTACTTCGGAACAAAACACTTCTTCATCATCATCCGATGGTGATAATACTATAAATAACAACAGCAGAGCTGATGATGAAGGAAATGGAATGTTAAGGATTGATATACCCAATGAGTGTGAGGCCACTACTTCATCATCATCACCCTTATCTTCGGCGGAAGGGAGATTAAAGTCATTAAAGAGGCTTTTAAGCAGTAGCAGCAGAGGCATAATGAGCCTGAATCCTTGGAGTCCCACTTCTACTGTCCAACAACAAACAAAGCCAAAGGAAGCAGCAGGACAAAGCTAG 870 0.4368 MSDSLASDNNQLHDSPAVDITGKIMVVIIILLFMVIVTFLFFHLFAKGFWWTQSRRSSDNNSQSRRRRRSGQEGGGLDPSVLNSLPISIFNSKEDGFDLECSVCLSEVVEGEKVRVLPKCNHMFHIDCIDMWFHSHSTCPLCRTTLAATPPPSSVVVVVDIESSTSAAAAAAAFPTNVLIWGNHNQITSSSSSTTSEQNTSSSSSDGDNTINNNSRADDEGNGMLRIDIPNECEATTSSSSPLSSAEGRLKSLKRLLSSSSRGIMSLNPWSPTSTVQQQTKPKEAAGQS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3932 289 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Mtr7g3932 289 SMART ring_2 101 142 IPR001841 -
Mtr7g3932 289 MobiDBLite consensus disorder prediction 261 289 - -
Mtr7g3932 289 MobiDBLite consensus disorder prediction 55 80 - -
Mtr7g3932 289 SUPERFAMILY RING/U-box 81 149 - -
Mtr7g3932 289 PANTHER RING-H2 FINGER PROTEIN ATL3 6 266 - -
Mtr7g3932 289 CDD RING-H2_EL5_like 100 143 - -
Mtr7g3932 289 MobiDBLite consensus disorder prediction 189 219 - -
Mtr7g3932 289 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 266 IPR044675 -
Mtr7g3932 289 MobiDBLite consensus disorder prediction 189 225 - -
Mtr7g3932 289 Pfam Ring finger domain 100 143 IPR001841 -
Mtr7g3932 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3932 Mtr-Chr7 56107218 56108720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3932 19 258 C3H Transcription Factor Family AT1G53820 32.509 1.22e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3932 - - mtr:MTR_7g117540 466.077