Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3927 ATGATGGGCAGCAACAATGGATCACCATCACAGTTTGGGGACACAACGCTGACAAAAGTGTTCGTTGGAGGTCTTGCCTGGGAAACTCCGAAAGACACATTAAGAGAACACTTCGAAAAATACGGAGACATCCTTGAAGCTGTCATAATTTCTGATAAGGTTACCGGCAGATCCAAAGGGTATGGATTTGTAACATTCAAAGATGCAGATTCTGCAAAGAAGGCTTGCGAGGAACCAACTGTGATCATCAATGGTCGACGAGCCAACTGCAATATCGCTTCTCTTGGTGCTCGTCGTCCAAGGTCTTCTCCCATCACTCCTCCTCCTTCTCCTCCTCCTCTTCCATACACACAAGGAGGAACAAAGAATATCCACCGTAGAAATCAGCAGCAGGTTCAATGGTATTATCCGGTGGTAACACCTACACCTCCTTCCTCAATATTCCATCATCATCATGCCCTTCCTTTCTACGGGTACACGCCCACCTACATTGCAACAGATCATATGAATTACAATTACAATCAGCAGAAACTGAGCTATGGAATGGGTGGGGGCTACGTGTACCCGCCGCCGAGGCAGGCTATTGTGGGTGCGATGCCAATCATGTACCACCACCCTGCTCCTGTCTACAGATCAACCGAGGCTATGGCAATGGGTGTCCCTCCACCTCAAATCTTCCACCAAACTCATCAATATCATTATGCCCCATCCATCACTCCTACTACAGGTACAGTTGGCACGGGTGAATGCTTCAAAAGGGTAGTGGTCTGA 771 0.4786 MMGSNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEEPTVIINGRRANCNIASLGARRPRSSPITPPPSPPPLPYTQGGTKNIHRRNQQQVQWYYPVVTPTPPSSIFHHHHALPFYGYTPTYIATDHMNYNYNQQKLSYGMGGGYVYPPPRQAIVGAMPIMYHHPAPVYRSTEAMAMGVPPPQIFHQTHQYHYAPSITPTTGTVGTGECFKRVVV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3927 256 PANTHER GEO13361P1-RELATED 5 234 - -
Mtr7g3927 256 SMART rrm1_1 19 91 IPR000504 GO:0003723
Mtr7g3927 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 85 IPR000504 GO:0003723
Mtr7g3927 256 Gene3D - 3 104 IPR012677 -
Mtr7g3927 256 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 5 234 - -
Mtr7g3927 256 SUPERFAMILY RNA-binding domain, RBD 17 105 IPR035979 GO:0003676
Mtr7g3927 256 MobiDBLite consensus disorder prediction 102 116 - -
Mtr7g3927 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 95 IPR000504 GO:0003723
Mtr7g3927 256 CDD RRM_RBM24_RBM38_like 18 93 - -
Mtr7g3927 256 MobiDBLite consensus disorder prediction 96 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3927 Mtr-Chr7 56062586 56064168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3927 14 191 C2H2 Transcription Factor Family AT2G19380 28.358 2.00e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3927 - - mtr:MTR_7g117495 509.605