Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3922 ATGGAGGATGATGCCGATGCCGCTGCTGCCGCCGCTGCCGTGAATAACAACAATAGGGTTTCTTCGTCAAATCCTTACTGGCTGGATGCCTGTGAAGATATTTCTATATCTTGTGATGATATCATTGATTTTGATGTTTCTAATGATTCTGACCAACAACCCAACAACAACAACCAAGACTTTTTTGGTGGTATTGATCGAATCTTTGACAGCATCAAAAACGGCGCTGGTCTCCCTGATCATCCTCCTGCTTCTGCTGCTGATGATGGGAATCAACTACCTCCTACTCATCTTCAACTAGAAGAACAACACCAACAGGTAGAAGAAGAAGAACAAGAACAAGAAAGGTTCAACAAAAGGGCTCGCCTCACCGAAGGAGAAAGGAGAATCAATCATCAACCCAACAACAACAACAAGGACAGGTATGAGAGGTGTTTCAACAATAATAGGAAGAGACCAAGGAATAATAATAATCATAATCATTCCTTTAAAAGAGATGTCAAGGGTTATTGGGAGAGGGATAAGTCTTCTAATGACTTGGTCTTTCGCTCCGGAACTTGGGAACCCAATCTTCATACTTCCCAACACAAAATGGACATAGACAACCCCATCAAACAGGAAAAACCCAAGGAGACTGTTCCTGTTCCTGAGGAAAAAGCCAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGACCAGAAATACAATAGCTTTTCTAGAAACTGGAGCTGGCAAAACCCTCATTGCCGTTCTTCTCATCAAGTCTATACATGAGACATTACATCTCCAAAATAAGAAAATGCTTGCTGTGTTTTTGGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAGGTAATCCGTGAGCGCACTGGATATCAAGTGGGGCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAGCATGTTTTAGTCATGACCGCTCAAATACTTTTGAACATTTTGAGGCATAGCATCATAAAAATGGAAGCAATCAATCTCCTGATTCTTGATGAGTGCCATCATGCTGTGAAGAAACACCCATATTCGCTGGTGATGTCTGAGTTCTACCATACAACGCCCAAAGAAAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTTTCCAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTAGAGAAACACGTGCCTATGCCCTCTGAGATTGTGGTGAAGTATGATAAAGCGGCCAGTCTATGTTATTTACATGAGCAAATAAAGCAGATGGAGACTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAATTGGGACAGTGGTGTGCATATAAGGTTGCACAATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTATCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTGTCTCTTCTGAAATGTCAGCTGTCAGAGGGTGCCATTTCTGACAAAAATGATGGAGTAGATGACTCACAAAATGGTGCAGCTCACAGTGGGTCTGATGAACATGAAGAGATTGAAGAAGGAGAGCTTCCAGACAGTCACGTTGTCTCTGGTGGGGAGCATGTTGATGTCATAATAGGTGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTCCGTGCAATCATCTTTGTTGAACGTGTTGTGTCTGCATTAGTTCTACCCAAGGTTTTTGCCGAGCTTCCATCTCTTAGTTTTGTCAAGTGTGCAAGCTTGATTGGCCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCATGATACAATTGCCAAGTTCCGTGATGGGCGGGTCACGTTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGTCTTGATATCCGGCAATGTAACGTTGTTATTCGCTTTGATCTTGCGAAGACTGTTCTGGCATACATTCAGTCTAGGGGACGTGCTAGAAAGCCTGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCACATGAAGCTTTCCTAAAGAATGCCAGGAACAGTGAGGAAACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACAGTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATGTACCAGGTGAAATCTACCGGTGCAGTAGTTAGCTTAAATTCCGCTGTAGGTCTTGTCCACTTCTATTGCTCCCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCCGAGTTTATTATGGAGAAGCATGAAAACTCCGGAGGTCCCACTGAATATTCTTGCAGGCTTCAACTGCCATGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATCCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAGAAAATTGCACGAAATGGGAGCATTCACTGACATGCTATTGCCGGATAAAGGAAGTGGGGAAGAAAAAGAAAAGGCTGAGCAAAATGATGAAGGGGATGCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGTAACAACTCCAAATTGCTTCATCTTTATATGTATACCATAAAGTGCGAGAATGTAGGCCATTCTAAGGATCCGTTCTTGACTCAGGTTTCAGATTTTGCAGTACTTTTTGGCACTGAACTGGATGCAGAGGTCTTATCGATGTCGATGGATCTATTTATCGCTCGAACCGTGACTACGAAGGCGTCTCTTGTCTTTAGAGAGTCAATAGATATCACTGAGAGTCAGTTGACGTCCCTGAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATCTGTTTGTCCCAATGGTTGGCGATAAGTCTTCAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCCGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACTTTAGGTGGTGACAGAAGGGAATACGGATTTGGGAAATTGCGTCATGGCTTGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTAGTGAAAGCTTCAGGATTGGTTCCCAACAGAGATTCCATGGAAACACAAAATCATATCAATATGACTACCAAAGGAAAATTGATGATGGCAGATACATGTACCAGTCCAGATGATCTAGTAGGGAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCTATACGCTATGAAATGACAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAATACAGTTCATATGCTGATTACTACAAGCAAAAATATGGTGTTGATTTGGCTTACAAGCAACAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAGGACATGAAGATGAAACTGAAGAGACCCACGACAAAACTTACTATGTTTTCCTTCCTCCAGAGCTATGCCTAGTACACCCACTGCCTGGATCACTCGTTCGTGGTGCTCAGAGGCTGCCTTCAATAATGAGGAGGGTTGAAAGCATGCTGCTTGCAGTTCAGCTTAAGAATATGATAAATTATCCTGTCCAGGCTTCAAAGATCTTGGAAGCCTTGACCGCTGCCTCTTGCCAGGAGACTTTCTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCTTACCTGAAATGGGTTGTTAGTCGTTTTCTTTTCCTAAAACATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTCTTATATCGGTACGCATTAAGTAAAGGTCTTCAATCATATATCCTAGCAGATCGTTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTACCTGTCTTTGATGAGGATACAAAGGATGAGGAGTCGTCTTTATTTGACCAGGAGCGTTCCATTTTTAAGGCCGAGAGGATGGACAACACTGATGAATTTGAGGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCCAGCAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTTGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCACATAGAGATCGATCCTGATGAGATGGAGTGTATAACGAAGCCATCCAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTCTAAATATTAAGTTTAAAGACAAGGGGCTGCTGATAGAATCCATTACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGACCATCTTATAACCAGGCACTTATTTTTCTCGTACACAGATCTGCCACCAGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTACAGTTAAACACAATCTTCACCTGCATCTGCGGCATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGATTTTGTGAAGGAAGTTCAAGATGAATTGTCAAAACCAGGGTTTAACTCTTTTGGTCTTGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATCCTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGGAATACTGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACACCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTTCAAGAGCGATGCCAGCAGCAGGCTGAAGGCTTGGAGTATAGAGCAAGTCGTGCTGGAAATTTAGCCACTGTTGAAGTATTCATTGATGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAGAAAATGGCACAGAAATTAGCTGCCCGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGAGAGTAAAATTCAGGAGAAAAATGATGAAAAGGAGACAAAGAATGGGAACCAGACATTTACTAGACAAACATTAAATGATATATGTTTGCGAAGAAACTGGCCTATGCCATTCTACCGGTGTGTGAGTGAGGGTGGTCCTGCACATGCAAAGAGGTTTACATTTGCAGTGCGAGTGAATACTACTGATAAAGGTTGGACGGATGAATGTGTTGGAGAGGCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTGGAACTAATAAACAAATTATACTCGTCATAG 5643 0.4324 MEDDADAAAAAAAVNNNNRVSSSNPYWLDACEDISISCDDIIDFDVSNDSDQQPNNNNQDFFGGIDRIFDSIKNGAGLPDHPPASAADDGNQLPPTHLQLEEQHQQVEEEEQEQERFNKRARLTEGERRINHQPNNNNKDRYERCFNNNRKRPRNNNNHNHSFKRDVKGYWERDKSSNDLVFRSGTWEPNLHTSQHKMDIDNPIKQEKPKETVPVPEEKARQYQLDVLEQAKTRNTIAFLETGAGKTLIAVLLIKSIHETLHLQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVKYDKAASLCYLHEQIKQMETEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAISDKNDGVDDSQNGAAHSGSDEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARNSEETLRREAIERTDLSHLKDSSRLISVDTHPETMYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSIRLAQQAVCLAACRKLHEMGAFTDMLLPDKGSGEEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYTIKCENVGHSKDPFLTQVSDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRESIDITESQLTSLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSSDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSMETQNHINMTTKGKLMMADTCTSPDDLVGRIVTAAHSGKRFYVDSIRYEMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDETEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEESSLFDQERSIFKAERMDNTDEFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECITKPSNVPDSILRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEESKIQEKNDEKETKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTDECVGEAMPSVKKAKDSAAVLLLELINKLYSS* 1881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3922 1880 CDD SF2_C_dicer 621 751 - -
Mtr7g3922 1880 SUPERFAMILY RNase III domain-like 1541 1711 IPR036389 GO:0004525|GO:0006396
Mtr7g3922 1880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 404 IPR014001 -
Mtr7g3922 1880 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1801 1872 - -
Mtr7g3922 1880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 354 IPR027417 -
Mtr7g3922 1880 SUPERFAMILY dsRNA-binding domain-like 1805 1874 - -
Mtr7g3922 1880 MobiDBLite consensus disorder prediction 73 163 - -
Mtr7g3922 1880 Coils Coil 1771 1798 - -
Mtr7g3922 1880 ProSitePatterns Ribonuclease III family signature. 1577 1585 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 Gene3D Ribonuclease III domain 1320 1516 IPR036389 GO:0004525|GO:0006396
Mtr7g3922 1880 Gene3D Ribonuclease III domain 1537 1711 IPR036389 GO:0004525|GO:0006396
Mtr7g3922 1880 Gene3D - 215 459 IPR027417 -
Mtr7g3922 1880 Gene3D - 1714 1791 - -
Mtr7g3922 1880 ProSiteProfiles PAZ domain profile. 1159 1299 IPR003100 GO:0005515
Mtr7g3922 1880 ProSiteProfiles Ribonuclease III family domain profile. 1542 1690 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 Gene3D Dicer dimerisation domain 811 914 IPR038248 -
Mtr7g3922 1880 SUPERFAMILY PAZ domain 1182 1299 IPR036085 GO:0005515
Mtr7g3922 1880 MobiDBLite consensus disorder prediction 102 150 - -
Mtr7g3922 1880 Pfam PAZ domain 1184 1319 IPR003100 GO:0005515
Mtr7g3922 1880 CDD RIBOc 1558 1713 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 Gene3D - 614 780 IPR027417 -
Mtr7g3922 1880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 754 IPR027417 -
Mtr7g3922 1880 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1716 1779 IPR014720 -
Mtr7g3922 1880 SMART PAZ_2_a_3 1159 1323 IPR003100 GO:0005515
Mtr7g3922 1880 Pfam Helicase conserved C-terminal domain 624 741 IPR001650 -
Mtr7g3922 1880 SMART riboneu5 1338 1520 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 SMART riboneu5 1557 1713 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 SUPERFAMILY dsRNA-binding domain-like 1672 1798 - -
Mtr7g3922 1880 Gene3D paz domain 1164 1305 - -
Mtr7g3922 1880 Coils Coil 97 127 - -
Mtr7g3922 1880 MobiDBLite consensus disorder prediction 902 926 - -
Mtr7g3922 1880 SMART ultradead3 216 419 IPR014001 -
Mtr7g3922 1880 CDD DEXHc_dicer 219 418 - -
Mtr7g3922 1880 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1801 1876 IPR014720 -
Mtr7g3922 1880 SMART helicmild6 657 743 IPR001650 -
Mtr7g3922 1880 CDD RIBOc 1338 1517 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 627 788 IPR001650 -
Mtr7g3922 1880 CDD DSRM_DCL_plant 1807 1876 - -
Mtr7g3922 1880 Pfam Dicer dimerisation domain 816 904 - -
Mtr7g3922 1880 ProSiteProfiles Ribonuclease III family domain profile. 1342 1501 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 MobiDBLite consensus disorder prediction 581 600 - -
Mtr7g3922 1880 Pfam Ribonuclease III domain 1577 1690 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 Pfam Ribonuclease III domain 1356 1501 IPR000999 GO:0004525|GO:0006396
Mtr7g3922 1880 Gene3D - 1807 1876 - -
Mtr7g3922 1880 MobiDBLite consensus disorder prediction 1 24 - -
Mtr7g3922 1880 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 187 1877 - -
Mtr7g3922 1880 MobiDBLite consensus disorder prediction 904 926 - -
Mtr7g3922 1880 Pfam Type III restriction enzyme, res subunit 229 386 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mtr7g3922 1880 MobiDBLite consensus disorder prediction 568 600 - -
Mtr7g3922 1880 SUPERFAMILY RNase III domain-like 1315 1519 IPR036389 GO:0004525|GO:0006396
Mtr7g3922 1880 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 816 911 IPR005034 GO:0016891
Mtr7g3922 1880 PANTHER DICER-RELATED 187 1877 - -
Mtr7g3922 1880 SMART DRBM_3 1802 1875 IPR014720 -
Mtr7g3922 1880 SMART DRBM_3 1717 1778 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3922 Mtr-Chr7 55956829 55967131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3922 640 783 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 5.92e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3922 K11592 - gmx:100811631 3126.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3922 7 55956829 55967131 Mtr7g3922 7 55956829 55967131 ECH