Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3911 ATGTCAGAAGGTGCTGAGATCGATGATCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAGATGGACGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGCGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACACGAATATGAGGAGACAGCAGCAGAGGCTGGTCAGAAAGACCAATTTCCCGAAGGAGAAAAAAGTGACCACGGCGCTGAAGAAGATGAGCTTAAACCAGCTCTCATTGATGAAGAGGAGAGAGAGAAGCATGATGAACTTCTTTCCCGTCCTCCTCATGGGTCTGAAGTCTTTATTGGCGGACTTCCTCGGGATACATCTGACGATGATGTCAGGGAATTGTGTGAGCCCATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGAGACTGGAGAAAGCAAGGGTTATGCTTTCGTGGGTTATAAAACAAAGGAGGTGGCACAGAAGGCCATCGATGATATACATAACAAGGAATTTAAGGGAAAAACTTTGAGGTGTTTGCTGTCTGAAACCAAACACAGGTTATTCATTGGTAACATTCCAAAAACATGGACAGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCCGGAGTTGAAAGCATTGATCTCATAAAGGACCCTCAAAATCAAAGCAGAAATCGTGGTTTTGCTTTTGTTTTGTATTACAACAATGCATGTGCTGATTTTTCGCGACAAAAGATGTCAAGTGTGGGTTTCAAGCTAGACGGTATCACACCCACTGTCACATGGGCTGACCCAAAGACCTCACCTGACCAGTCTGCTGCTGCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCTTCAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACGGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCGAAGCCTCAGGCTGAAAAAAAACCTGATGGCGGCTACGCGTACAATCCTGGACTCCATCCTAACCATCTTCCACATCCTGGTTATGGTAACTTCTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTGCTGCTGCTGCTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGGTCCCCGACCCCGTAGAAATGACCGGGGAAATGGTCCAGGCGGGCGTGGAGGAGGCGGTGGTAATGATGATGGAAATCGTAATAGAAGGTATCGACCCTATTAG 1440 0.4528 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDQFPEGEKSDHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRNDRGNGPGGRGGGGGNDDGNRNRRYRPY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3911 479 CDD RRM3_hnRNPR_like 279 357 - -
Mtr7g3911 479 Gene3D - 267 385 IPR012677 -
Mtr7g3911 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Mtr7g3911 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Mtr7g3911 479 MobiDBLite consensus disorder prediction 49 100 - -
Mtr7g3911 479 SUPERFAMILY RNA-binding domain, RBD 184 359 IPR035979 GO:0003676
Mtr7g3911 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 247 IPR000504 GO:0003723
Mtr7g3911 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Mtr7g3911 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Mtr7g3911 479 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Mtr7g3911 479 SMART rrm1_1 281 353 IPR000504 GO:0003723
Mtr7g3911 479 SMART rrm1_1 185 262 IPR000504 GO:0003723
Mtr7g3911 479 SMART rrm1_1 105 178 IPR000504 GO:0003723
Mtr7g3911 479 Gene3D - 184 265 IPR012677 -
Mtr7g3911 479 MobiDBLite consensus disorder prediction 439 479 - -
Mtr7g3911 479 Gene3D - 9 183 IPR012677 -
Mtr7g3911 479 MobiDBLite consensus disorder prediction 1 115 - -
Mtr7g3911 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Mtr7g3911 479 SMART rrm2_1 105 178 IPR003954 GO:0003676
Mtr7g3911 479 MobiDBLite consensus disorder prediction 8 48 - -
Mtr7g3911 479 CDD RRM_SF 106 177 - -
Mtr7g3911 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 477 - -
Mtr7g3911 479 PANTHER GEO13361P1-RELATED 2 477 - -
Mtr7g3911 479 SUPERFAMILY RNA-binding domain, RBD 93 183 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3911 Mtr-Chr7 55852866 55859113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3911 104 364 Eukaryotic Initiation Factors Gene Family AT1G71770 20.879 1.06e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3911 K13161 - gmx:100790907 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3911 7 55852866 55859113 Mtr7g3911 7 55852866 55859113 ECH