Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3907 ATGTCGCTCGGAGAAACTGCTTGCTCATACGCCCTTCTCATCCTTGAAGATGACAACATTCCAGCAACTGCTGACAACATAACCTCTTTGTTGAAATCCGCAAAGGTTGATGTTGAATCTTTCTGGCCTGCTTTATTCGCTAAACTTGCTGAAAAGAAAAATATTAGGGATTTGATTGCCAGTGCTGCTGGAGGTGGTGCTCCCGGAGTAGCTGTTGCCGCTGCTCCAGCTGCAGCATCAGGTGGTGGTGCCGCTGCTGCTCCAGCTGCTGCCGAGAAGAAACCAGAGCCAGAGGAAGAAGAGAGTGATGAGGAAATGGGATTCGGCTTGTTTGATGAATAG 342 0.4912 MSLGETACSYALLILEDDNIPATADNITSLLKSAKVDVESFWPALFAKLAEKKNIRDLIASAAGGGAPGVAVAAAPAAASGGGAAAAPAAAEKKPEPEEEESDEEMGFGLFDE* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3907 113 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Mtr7g3907 113 Gene3D - 1 62 IPR038716 -
Mtr7g3907 113 CDD Ribosomal_P1 5 59 - -
Mtr7g3907 113 Pfam 60s Acidic ribosomal protein 23 111 - -
Mtr7g3907 113 MobiDBLite consensus disorder prediction 84 113 - -
Mtr7g3907 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 105 - -
Mtr7g3907 113 MobiDBLite consensus disorder prediction 97 113 - -
Mtr7g3907 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3907 Mtr-Chr7 55827219 55828033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3907 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 50.000 1.31e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3907 K02942 - gmx:100791962 103.605