Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3900 ATGGTTATCTTTATTTACACCCCCATATTACTCAAAATCGCCATCCTCTTATTCTCAATTTATGCAATACACATGATATTCGAAACAGGTCTGATACACGAGTCAACGAAACTATGGAGAATCATCGAAGATTGGTTCCACGTGTATCAGGTTTTCCATGTTCCAGAACTAAACGACAACATGCAACACAACACTTTATACAGAAAACTCTCTCTCTACTTTCATTCCCTTCCTTCCCTCCAAAACTCACAATTAAACAACCTCGTCACTTCCAATACCAACCAAAACGACGTCGTTCTCACCCTCGCCCCTAATCAAACCATCCACGATCATTTTCTCGGTGCCACCGTTTCCTGGTTCAACCAAACCCAACCCAACCGAACCTTCATTCTCAGGATCAGAAAATTCGATAAGCAAAGAATCCTTCGTGCTTATATTCAACACATTCACGCCGTTGTTGATGAAATCGAAAAACAGGGCAATCGCGATTTGCGTTTCTACATGAACGCAAGTGATTTCGGACCGTGGAGATTCGTTCCGTTTACTCATCCTTCCACTTTCGAAACAATTACAATGGAAACCGATCTCAAAAACAGAGTCAAATCCGATCTAGAATCATTCCTCAAAGGTAAACAATACTATCACCGCCTTGGCCGTCTCTGGAAACGGAGCTTCCTTTTATACGGTTCTTCCGGCACCGGAAAATCTAGTTTTATCGCCGCCATGGCCAATTTTCTCTCTTACGACGTCTACTACATAGACCTATCCAGAATTTCAACCGATTCAGATCTTAAATCCATCCTACTTCAAACAGCACCGAAATCAATAATCGTCGTTGAAGATCTTGATCGGTATCTCACTGAGAAATCATCCACAACAGTAACTTCATCGGGGATATTGAACTTCATGGACGGAATTTGGAGCGGCGAAGAGAGAGTGATGGTTTTCACAATGAACAGTAAAGAGAACGTGGACCCGAATCTACTTCGTCCGGGTCGGGTTGATGTACATATCCATTTTCCACTTTGTGATTTTTCATCTTTCAAAACACTTGCTAGTAACTACCTTGGTGTAAAGGATCATAAACTGTTTCCACAAGTTCAGGAAATATTTGAAAACGGAGCGAGTTTGAGTCCAGCAGAAATCGGTGAGTTGATGATCGCGAATCGGAACTCACCGAGTCGTGCGATTAAAACAGTTATAACTGCGTTGAAAACGGACGGTGATGGAAGAGGATGTGGATTCATCGAACGGCGAATAGGGAATGAGGGTGATGGCGTGGATGAGGGTGCACGTGATACGCGGAAATTGTACGGGTTTTTCAGATTGAAAGGTCCTAGAAAATCTTCTTCTTCACCAAACAGTGTATTGGTGGCGAGTCCGTTGCGAATTTGCGAGGAGGAATGA 1407 0.4293 MVIFIYTPILLKIAILLFSIYAIHMIFETGLIHESTKLWRIIEDWFHVYQVFHVPELNDNMQHNTLYRKLSLYFHSLPSLQNSQLNNLVTSNTNQNDVVLTLAPNQTIHDHFLGATVSWFNQTQPNRTFILRIRKFDKQRILRAYIQHIHAVVDEIEKQGNRDLRFYMNASDFGPWRFVPFTHPSTFETITMETDLKNRVKSDLESFLKGKQYYHRLGRLWKRSFLLYGSSGTGKSSFIAAMANFLSYDVYYIDLSRISTDSDLKSILLQTAPKSIIVVEDLDRYLTEKSSTTVTSSGILNFMDGIWSGEERVMVFTMNSKENVDPNLLRPGRVDVHIHFPLCDFSSFKTLASNYLGVKDHKLFPQVQEIFENGASLSPAEIGELMIANRNSPSRAIKTVITALKTDGDGRGCGFIERRIGNEGDGVDEGARDTRKLYGFFRLKGPRKSSSSPNSVLVASPLRICEEE* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3900 468 PANTHER BCS1 AAA-TYPE ATPASE 13 430 - -
Mtr7g3900 468 CDD AAA 222 342 - -
Mtr7g3900 468 Gene3D - 178 338 IPR027417 -
Mtr7g3900 468 Pfam Domain associated at C-terminal with AAA 37 120 IPR025753 -
Mtr7g3900 468 Gene3D - 339 405 - -
Mtr7g3900 468 PANTHER BNAC04G00800D PROTEIN 13 430 - -
Mtr7g3900 468 Pfam ATPase family associated with various cellular activities (AAA) 226 342 IPR003959 GO:0005524|GO:0016887
Mtr7g3900 468 SMART AAA_5 221 344 IPR003593 -
Mtr7g3900 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 403 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3900 Mtr-Chr7 55773651 55775515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3900 178 356 Miscellaneous Gene Families AT5G53170 26.702 3.93e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3900 - K08900 gmx:100776680 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3900 7 55773651 55775515 Mtr7g3900 7 55773651 55775515 ECH
Mtr8g0768 8 9506666 9508750 Mtr7g3900 7 55773651 55775515 ECH
Mtr7g3900 7 55773651 55775515 Mtr8g0768 8 9506666 9508750 PCT