Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3895 ATGGCTCTCGATTCATTGACGTCTGGTCTTGCTTCGGAAGCTATTTCTCAAATTATAGATACCGTTTCCGAGATTGTATATTCTGCTGGTGGTGTCCTTGTGAATAAGGATAGTTTTAAGGAACTTGCAGCTTACTTGCAAAGAATTGCGCCTATCTTAAAACAGTTGAGCAAAGAAAAGGTCAGTGATTCCGAGACATTCAACTACGCTATTGAGGTTCTGGATCGTGAAATCAAAGATGGAAAGAAATTGGTTCAAGAATGTAGCAAGAAGAGCAAGGTATATCTTCTTGTGAATTGCAGAACCGTTTTTAAGCGCTTGAAGCACAACACAAGCGAGATTAGCAAGGCACTTGGTCTTCTTCCTTTGGCTACATCAGGCCTTTCTGCTGGAATAATTGAAGAAATCAAAAGGTTATGTGACAATATGCAGGCAGCTGACTTTAAGGCAGCCATATCTGAGGAAGAGATATTAGAGAAAATCGAGTCAGCGATACAGGAAAAGAATTTCGACCGCTCCTATGCAAATAATTTGCTTCTTCTCATTGCAGATGCTGTTGGAATTACAAAAGAGCGGTCAACACTAAGAAAAGAGCTTGAAGAGTTTAAAAGTGAAATTGAAAATGAGAAAGACCGGGCTGAAACCATACAAATGGATCAAATTATTGCTTTGTTGGAAAGGTCTGATGCAGCCTCGTCAACTAGGGAAAAGGAACTCAAGTACCTCGCCAAACGAAATTCTTTGGGTAATCAACCGTTGGAGCCTTTACAGTCCTTTTATTGCCCCATTACGGGTGATGTTATGGTTGACCCTGTGGAAACTTCATCAGGGCAAACATTTGAGAGAAGTGCAATTGAAGAGTGGTTTGCAGAAGGAAACAAATTGTGTCCTCTGACTTTCATTACTTTAGACACGTTGATTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATGCAATGATCACAATTGCTTCAATGAGAGAGAAGAAAATCCAGTCTGGAGATGAAGTTGGAGTATTACATTGTCTGCAAGCTCTTCAAGATTTGTGTGAACAAAAGGATCAGCATAGAGAATGGGTGGTACTGGAGAATTATATACCTGTTCTTATCCAAATTCTTGCTGAAAAAAACAGTGATATAAGAAATCACGTCCTTGTCATCCTTTGCATGCTGGTGAAGGATAATGAAGATGCCAAGGAAAGAATTGCAAATGTTAAAAATGCAATTGAGTCTATTGTCCGTTCTCTTGGGCGTCGTTTGGGGGAAAGGAAGTTGGCGGTGGCATTACTTCTGGAACTATCCGAATATGATTTGTTAAGAGAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGATAATCAAGCTGCAAGAGATGCAACAGAGTTACTGGAGAAACTTTCATCCTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGCCTCTCCGCAGATGATGTGAAGATGATTATGGTCAAAATGTTAGCAGAAATGGAGTCAACAGACCGCAATAAGGAGATCTTATTTGACAGTGGTATTCTGCCTCCTCTTCTTCGCTTGGTCTCACATAATGATGTTGAGATGAAATTGGTTGCCCTTAAAGCTCTTCAGAATCTATCTACTTTAAAGAAAAATGGACTTGAAATGATTCAACAAGGTGCAGCACGCAAACTATTTGGCATTCTTTTCCAGCATAGCCTTCCTTCCTCAAGTTTGTCTGAACATGTAGCTCCCATAATTATGCAACTTGCTGCATCTACCATCTCCCAGGATACACAGACACCGGTTTCATTGTTAGAGTCCGATGAAGATGTTTTTAACCTTTTTTCTCTAGTTAGCTACACAGTGCCTGATGTGCGACAATATATTATCCAGACATTTTATTCCTTATGTCACTCGCCCTCAGCTTCGTATATCAGGAACAAGCTAAGAGAGTGCCCATCAGTTCTAGTATTGGTCAAATTGTTTGAGAATGAAAGCCTAAGTCTTCGAGCAAGTGCTGTGAAGTTGTTTTCTTGCCTGGTAGAAAGTTGTGATGAAGACGCCATACTAAAGCATGTGAATCAGAAGTGTATTGAGACTTTACTCCAGATGCTGAAATCTTCATCTGACAAAGAAGAAATTGTTTCTGCTATGGGAATAATTCGATATCTTCCAAAAGTTCAACAGATCACTCAGTGGCTTTATGATGCCGGGGCACTGTCAATCATTTGTAAATATGTCCAAGATGGCACGGATAAAGATCTCCAAAAGAGTAAGTTGGTAGAAAATTCTGCTGGTGCATTATGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGAGTGCAGCCGAAATTGGGATCATTACTGTTTTAGTACAGTTGCTTGAAAGTGGAACTGCTCAAACAAAACAGCTAGCAGCACTGTCCCTAACTCAATTTTCTAAAAGCTCAAATGAACTGAGCAGTCCAATGCCAAAGCGCAAGGGATTTTGGTGTTTCTCAGCTCAAACAGAAGCCGGATGCTTAGTTCATGGTGGTGTATGCATCGTGGAATCATCATTTTGCCTATTGGAGGCTGATGCGGTGGGAGCACTAGCAAAGACTCTTGGGGACTCTGATCTTGGAGTGTGTGAGAATTCTTTAGATGCTCTTCTAACTTTAATTGATGGGGAAAAGCTACAGAGTGGTAGTAAAGTGCTTGCAGATGAAAATGTCATACCACTAATAATAAGATTTCTCGGTTCCCCTTCTCCCGGATTGCAGGAAAAGTCTCTTAATGCTTTGGAGAGGATTTTCCGGCTATTAGAGTTCAAACAGAAATATGGAGCTTCAGCTCAAATGCCTTTGGTTGACTTAACTCAGCGGGGTAATGGTAGCATTAAATCCTTGGCAGCTCGAATATTGGCACATTTGAACGTGCTTCATGATCAATCTTCATATTTCTAA 3000 0.401 MALDSLTSGLASEAISQIIDTVSEIVYSAGGVLVNKDSFKELAAYLQRIAPILKQLSKEKVSDSETFNYAIEVLDREIKDGKKLVQECSKKSKVYLLVNCRTVFKRLKHNTSEISKALGLLPLATSGLSAGIIEEIKRLCDNMQAADFKAAISEEEILEKIESAIQEKNFDRSYANNLLLLIADAVGITKERSTLRKELEEFKSEIENEKDRAETIQMDQIIALLERSDAASSTREKELKYLAKRNSLGNQPLEPLQSFYCPITGDVMVDPVETSSGQTFERSAIEEWFAEGNKLCPLTFITLDTLILRPNKTLKQSIEEWKDRNAMITIASMREKKIQSGDEVGVLHCLQALQDLCEQKDQHREWVVLENYIPVLIQILAEKNSDIRNHVLVILCMLVKDNEDAKERIANVKNAIESIVRSLGRRLGERKLAVALLLELSEYDLLREYIGKVQGCILLLVTMSSSEDNQAARDATELLEKLSSSDQNVIQMAKANYFKHLLQRLSADDVKMIMVKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCLVHGGVCIVESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLADENVIPLIIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSLAARILAHLNVLHDQSSYF* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3895 999 CDD RING-Ubox_PUB 259 299 IPR045210 -
Mtr7g3895 999 Gene3D - 334 427 IPR011989 -
Mtr7g3895 999 Gene3D - 864 997 IPR011989 -
Mtr7g3895 999 Pfam Armadillo/beta-catenin-like repeat 525 563 IPR000225 GO:0005515
Mtr7g3895 999 SUPERFAMILY RING/U-box 247 327 - -
Mtr7g3895 999 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 999 - -
Mtr7g3895 999 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 999 - -
Mtr7g3895 999 Coils Coil 402 422 - -
Mtr7g3895 999 Coils Coil 185 219 - -
Mtr7g3895 999 SUPERFAMILY ARM repeat 337 989 IPR016024 -
Mtr7g3895 999 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 535 577 IPR000225 GO:0005515
Mtr7g3895 999 Gene3D - 11 126 IPR036537 GO:0007166
Mtr7g3895 999 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Mtr7g3895 999 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Mtr7g3895 999 SMART arm_5 743 790 IPR000225 GO:0005515
Mtr7g3895 999 SMART arm_5 402 442 IPR000225 GO:0005515
Mtr7g3895 999 SMART arm_5 911 951 IPR000225 GO:0005515
Mtr7g3895 999 SMART arm_5 360 400 IPR000225 GO:0005515
Mtr7g3895 999 SMART arm_5 523 564 IPR000225 GO:0005515
Mtr7g3895 999 SMART arm_5 702 740 IPR000225 GO:0005515
Mtr7g3895 999 Gene3D - 616 848 IPR011989 -
Mtr7g3895 999 Gene3D - 428 615 IPR011989 -
Mtr7g3895 999 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Mtr7g3895 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 333 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3895 Mtr-Chr7 55746820 55752954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3895 257 999 U-box Gene Family AT1G76390 26.869 2.33e-51 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3895 - - gmx:100799969 1350.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3895 7 55746820 55752954 Mtr7g3895 7 55746820 55752954 ECH
Mtr8g0770 8 9523457 9528671 Mtr7g3895 7 55746820 55752954 ECH