Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3889 ATGAATGATAAGTTTCCTATCGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACTTGTCTGAAGGTTTTGGAGAGACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAGTGCACGAACGGCATTGAACTTGTTGTTGAGAGAAAACAAAAACAATTTTGACCTAGTAATCAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAGTGTTTTCTGCAAATGATGATCCAAGGATGGTGATGAAAGGAATTGATCATGGTGCTTGTGATTATCTTCTGAAACCTGTTACATTGAAAGAGGTACAGATGATTTGGCAACATGTAATTAGGAAGAAGAAAACTAGCAAAAGAAGCAATCATGATGTGCCTAATTTTGATAGTGGAAATGTAATAGATTCAGCTGTGACAAGAAATTCTGATCAAAATGAAAAGCCAACTAGAAAAAGGAAGGATATGAATGATGATATTGAGGAGGAGAATGAAGATGATCATGACAATGATGATCCAACAGCACAGAAGAAGCCTCGAGTTGTTTGGTCCAATGACTTACACCGCAAGTTTCTTGCTGTTGTTAATGAATTAGGCATTGAAAATGCTATACCAAAAAAGATTCTTGAATTGATGAATGTTGAAAATCTTACAAGGGATAATGTGGCCAGCCATCTCCAGAAATATAGACTCTATCTGAAAGGAATTAGTTCTGGGGAAAACCAACAAGCAAATACATCCCATTCAAGATTCAGTTCTCTCACTAGAGTTGGAGGACATTTTCATACATTGAATAACCCTAGACAGTTTCATAATCATAACAGTGCTTTCAGACCCTTTCCCGCTAGTGTCAATATGCATGGATTTCCTACTCATAATTTAAACCACTCCGCAAAGATCACCTTAAGTTTCAACCGGCCAAAGCTCATGCCAATCCGAACCATGTTCAAAGAATGCCAATTTCTTCTGTAG 1011 0.3788 MNDKFPIGMRVLAVDDDRTCLKVLERLLQRCQYHVTTAQSARTALNLLLRENKNNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIVFSANDDPRMVMKGIDHGACDYLLKPVTLKEVQMIWQHVIRKKKTSKRSNHDVPNFDSGNVIDSAVTRNSDQNEKPTRKRKDMNDDIEEENEDDHDNDDPTAQKKPRVVWSNDLHRKFLAVVNELGIENAIPKKILELMNVENLTRDNVASHLQKYRLYLKGISSGENQQANTSHSRFSSLTRVGGHFHTLNNPRQFHNHNSAFRPFPASVNMHGFPTHNLNHSAKITLSFNRPKLMPIRTMFKECQFLL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3889 336 Pfam Response regulator receiver domain 11 118 IPR001789 GO:0000160
Mtr7g3889 336 Gene3D - 187 249 - -
Mtr7g3889 336 SMART REC_2 9 122 IPR001789 GO:0000160
Mtr7g3889 336 Pfam Myb-like DNA-binding domain 193 243 IPR001005 -
Mtr7g3889 336 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 317 IPR045279 GO:0009736
Mtr7g3889 336 SUPERFAMILY Homeodomain-like 189 248 IPR009057 -
Mtr7g3889 336 ProSiteProfiles Response regulatory domain profile. 10 126 IPR001789 GO:0000160
Mtr7g3889 336 Gene3D - 8 140 - -
Mtr7g3889 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 247 IPR017930 -
Mtr7g3889 336 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 191 244 IPR006447 GO:0003677
Mtr7g3889 336 MobiDBLite consensus disorder prediction 132 194 - -
Mtr7g3889 336 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 317 - -
Mtr7g3889 336 MobiDBLite consensus disorder prediction 138 157 - -
Mtr7g3889 336 MobiDBLite consensus disorder prediction 158 172 - -
Mtr7g3889 336 PIRSF RR_ARR_type-B 1 331 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr7g3889 336 SUPERFAMILY CheY-like 8 134 IPR011006 -
Mtr7g3889 336 CDD REC_typeB_ARR-like 11 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3889 Mtr-Chr7 55695728 55698334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3889 3 299 Response Regulator Gene Family AT4G31920 56.209 5.77e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr7g3889 Response_reg 2.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3889 - K14491 mtr:MTR_1g013180 465.307