Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3886 ATGGACAATCAACCAACACCATTCATTGAAGATGATGTAACCGCTGCTGACAGACAGAGAGGTGGAACACGCCACCCTGTCTACCGCGGTGTCCGTAAACGGCGGTGGGGAAAATGGGTATCAGAAATTCGTGAACCCAAGAAGAAATCTCGCATATGGCTAGGATCATTCCCGGTGCCGGAGATGGCTGCTAAAGCATATGACGTTGCAGTGTATTGCCTGAAAGGCCAAAAAGCGCAACTCAACTTTCCCGACGAGGTGGAGAATCTACCACTTCCGGCTACATGTACGGCCAGAGACATTCAGGCTGCGGCAGCTAAGGCGGCGGCGAGTATGATGAAGGCTTCGTTGGATGAGAAGGGTTGCATTGTGTCTGATGAAGATGATTTTTGGGGTGAGATTGAATTGCCGGAGCTGATGGAGAGTGATTCGTCGTGGAGTTGCTCCGGTGATATCATGACGTGGCCAGAAGTTGAGGTTTTGGCGCAGCAACATTTCATGTCGTCGTGTCTATAA 516 0.5058 MDNQPTPFIEDDVTAADRQRGGTRHPVYRGVRKRRWGKWVSEIREPKKKSRIWLGSFPVPEMAAKAYDVAVYCLKGQKAQLNFPDEVENLPLPATCTARDIQAAAAKAAASMMKASLDEKGCIVSDEDDFWGEIELPELMESDSSWSCSGDIMTWPEVEVLAQQHFMSSCL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3886 171 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mtr7g3886 171 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Mtr7g3886 171 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Mtr7g3886 171 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Mtr7g3886 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 170 - -
Mtr7g3886 171 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Mtr7g3886 171 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Mtr7g3886 171 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Mtr7g3886 171 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mtr7g3886 171 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3886 Mtr-Chr7 55683210 55683930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3886 23 171 AP2-EREBP Transcription Factor Family AT1G01250 65.584 3.80e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr7g3886 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3886 K09286 - gmx:100802036 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3886 7 55683210 55683930 Mtr7g3886 7 55683210 55683930 ECH
Mtr7g3886 7 55683210 55683930 Mtr8g0792 8 9766808 9767579 PCT