Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3885 ATGGGATCAATAAGGCGCATGATATGGAATGAAGAAGAGAAAACAATGGTTGAAGCTGTTCTTGGTGCTAGAGCTTTGGATTTTTTGATAAATAACTGTTTATCAAATGAGAGTGGATTGATTGCTGTTGGTGAAAGTGTTGATTCTCTTCAAAACAAACTCTCTGATCTTGTTGAAAATTCTTCATCCAATTTCAATTGGAATTACGCGATTTATTGGCGACTTTCTAAGTCAAAATCTGGTGATTACGTTCTTTGCTGGGCAGATGGGTGTTGCAGAGAACCAAACGAAGAAGAAGGTGGTGGTGGTGGAGTTAGAGAAACTATGAGTCTTCGCATAGAGGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGAATGAAACAAAGTATGAAGAAGTGGGTTTTGCAGAAGTTGCATAAAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTCTTTTTCCCGAAAGGGTATGGTGGACCCGGTAAGTGTTTCGCTTCTGGTAAACATTTGTGGTTCAAATCTGTTTCTGATTACTGCTTTCGTTCTTTCTTGGCTAAATCTGCTGGTATTCAAACTGTTGTTTTAGTACCTACTGATTTTGGTGTTGTTGAGTTGGGTTCTGTTAGATTGTTACCTGAAATCTTTGATTTGTTAAACAAAATCAAATCACTGTTTTCAATTTCAAAACCATTGTATCCTAAGGTGGTCAATGAAGAAAGTTCAGTTTCAATTCCAAAACTTGTTTTGAATTTGAACAATGGTCGTACACATTTTAGGGAGAAACTTGCCATTAGGAAAATGGATAGTAATAATGTTAATAATAATAATAGCATTAACTTTCCTAGTGCTAGAAATGGTATTTGTGGTTCTAGTTGGGGAGTGAATCAAGGTCAAGGTGAAATTTTTGCTTCTAATGGTGTTAGAAAGGATTTTAGGCTCAACAACAATAATAGCAACTACCAACCACAAAGGCAGATGCCAATGCAAATTGACTTTTCGGGAGCAAATTCAAGGGCTAATTCTGTGAGACCGGTTATTGCTGAATCGGAACTTGTTGCTGATGTTGAGGCTGATCAACCTAGTGATGAAAGGAGACCTAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCTCTAAACCATGTGGAGGCAGAGAGGCAAAGGCGCGAGAAGCTTAATCAGCGGTTTTATGCCTTAAGAGCTGTTGTACCGAATATTTCCAAGATGGACAAGGCATCTTTACTTGGTGATGCTATTGCTTACATCAACGAGCTTCAAGCAAAACTCAAGATCATGGAGTCAGAGAGAGAATCATTTGGAAGCAGTACTTCCAGGGATGGATTGGCCAACTCGAGATCAGAAAATCGTCATCAGAATACTAGAGTTCCTCCTCCGGATGTGGATATTCAAGCTTCTCAAGATGAGGTAATCGTAAAGGTGAGCTGTTCTCTTGATACTCATCCTGTTTCGAAAGTAATCGAAACATTCAAAGAGGCACAAATCAGTGTTGTAGAGTCGAAACTTGCTGCTGCAAATGATACTATCTACCATAATTTTGTAATTAAGTCAGAAGGATCTGAACAGCTTACCAAGGACAAGTTGATTGCAGCATTTACCCGAGAATCCAACTCCTTACAAACCCAAACTTTGTCCATATAG 1725 0.3913 MGSIRRMIWNEEEKTMVEAVLGARALDFLINNCLSNESGLIAVGESVDSLQNKLSDLVENSSSNFNWNYAIYWRLSKSKSGDYVLCWADGCCREPNEEEGGGGGVRETMSLRIEEEKKEEEEEEEGMKQSMKKWVLQKLHKAFGGSDEDNYAFGLDRVTDTEMFFLASMYFFFPKGYGGPGKCFASGKHLWFKSVSDYCFRSFLAKSAGIQTVVLVPTDFGVVELGSVRLLPEIFDLLNKIKSLFSISKPLYPKVVNEESSVSIPKLVLNLNNGRTHFREKLAIRKMDSNNVNNNNSINFPSARNGICGSSWGVNQGQGEIFASNGVRKDFRLNNNNSNYQPQRQMPMQIDFSGANSRANSVRPVIAESELVADVEADQPSDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERESFGSSTSRDGLANSRSENRHQNTRVPPPDVDIQASQDEVIVKVSCSLDTHPVSKVIETFKEAQISVVESKLAAANDTIYHNFVIKSEGSEQLTKDKLIAAFTRESNSLQTQTLSI* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3885 574 PANTHER MYC 7 250 IPR045084 GO:0003700|GO:0006355
Mtr7g3885 574 PANTHER MYC 258 565 IPR045084 GO:0003700|GO:0006355
Mtr7g3885 574 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 398 447 IPR011598 GO:0046983
Mtr7g3885 574 CDD bHLH_AtAIB_like 395 459 - -
Mtr7g3885 574 MobiDBLite consensus disorder prediction 458 482 - -
Mtr7g3885 574 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 245 IPR025610 -
Mtr7g3885 574 SMART finulus 404 453 IPR011598 GO:0046983
Mtr7g3885 574 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 461 IPR036638 GO:0046983
Mtr7g3885 574 Pfam Helix-loop-helix DNA-binding domain 402 448 IPR011598 GO:0046983
Mtr7g3885 574 MobiDBLite consensus disorder prediction 373 409 - -
Mtr7g3885 574 MobiDBLite consensus disorder prediction 377 409 - -
Mtr7g3885 574 Gene3D - 392 462 IPR036638 GO:0046983
Mtr7g3885 574 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 7 250 - -
Mtr7g3885 574 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 258 565 - -
Mtr7g3885 574 Coils Coil 110 133 - -
Mtr7g3885 574 MobiDBLite consensus disorder prediction 457 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3885 Mtr-Chr7 55661636 55663954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3885 4 573 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.258 6.12e-172 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr7g3885 bHLH-MYC_N 1e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3885 - - cam:101513355 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3885 7 55661636 55663954 Mtr7g3885 7 55661636 55663954 ECH
Mtr7g3885 7 55661636 55663954 Mtr8g0793 8 9793504 9796244 PCT