Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3883 ATGGAAGCCGAAACACGAAGAAAAGTTGAAGAAATGGTTTTAGATATACTCAAAAAATCCAACATTGATGAAACCACCGAGTTCACCATTCGTGTTGCCGCCTCTGAACGACTCGGTATCGACCTTTCCGGCCCAGAGACCAAGCAGTTCGTCAGAACCATCATCGAGTCTTATCTTCTCTCTATCGCCACCGACGCAGACAAACCCCCTCAAGAACCACCGCAAGAGACACCCAAGGAAGTTGAACCACCACAACCACAAGAGTTCAATAAGGTGGTGGGTGTCAAACGCAAAAACGACGATTCAGAAGACGTTATTTGCCAGCTATCAGCCAGGAGGAATGTGGCGGTTCGAGATTTCAAAGGGATGACATTGGTTTCAATTAGGGAGTTCTACACTAAAGATGGAAAACAGCTTCCCACTGCTAAAGGGATAAGTTTATCTGCTGAACAATGGTCAGCTTTCAAGAATTTTGTTCCCGCTATAGAGGAAGCTATCACTAAGTTGGATGGAAGGATAAGATCAGAGCATAATGGCAGGAAAATTGGAGAAGCTTCAAGTTCAGTTGTTGATGTTCCCGTTGAGCCTGTCCCTGTTCAGTCTGTCCGTGTTGAGCCTGTCCCTGTTCAGTCTGTCCGTGTTGAGCCTGTCCCTATTGAGATCATCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCTGAACAGATGGAGTTACTCTTGAAACAGTTAAAGATCAATTACGTGCTCACTGAACCATGTCCAAATGCTACATTAGGGGAAAAAGATGCAAGTGCTGGAAAGATTGCTGAAACAAAAGCTGCTGAAAAGAGATGGGTAAATGATGATTCATTATGTCGTCGGAACATCTTGAACCATTTATCTGATAGTCTGTTCAACAAGTATGCGAATAGAAAAATGAGTGCTATTGAGTTATGGGAAGAGTTAAAATCTGTTTATCTGTATGAGGAATACGGAACAAAGAGATCTCAGGTGAAAAAGTATATTGAATTTCAAATAGTTGATGAAAAATCAGTTGTTCACCAAATTCAAGAACTTAATAGCATTGCAGACTCTGTTGCTGCTGTCGGAATGCATATTGAAGAGAACTTTCACGTTAGTGTCATCATTTCAAAGCTTCCGCTATCCTGGAAAGACTTTTGCATTAAGTTAATGTGCGAAGAGCATCTACCTTTCTGTAAGTTAATGGAATGCGTAACAAAAGAGGAAGAATATCGCAATGGAGTCAAACAAATGGGTGAACCTCCTTCTGATAATGTAAGATTTCACCATGCCAATAAAGGGGGACTCAGAGAGGCTGACATTAAGCCGCCACCAGGTTTTCAAAGGAAATTTGAATCTAATGGCAAGAACATTGCCTGTTATATTTGTGGGCAGAAGGGGCATATTTCTAAAAACTGTTGGAGATGGATGTAA 1434 0.417 MEAETRRKVEEMVLDILKKSNIDETTEFTIRVAASERLGIDLSGPETKQFVRTIIESYLLSIATDADKPPQEPPQETPKEVEPPQPQEFNKVVGVKRKNDDSEDVICQLSARRNVAVRDFKGMTLVSIREFYTKDGKQLPTAKGISLSAEQWSAFKNFVPAIEEAITKLDGRIRSEHNGRKIGEASSSVVDVPVEPVPVQSVRVEPVPVQSVRVEPVPIEIIRFDGKNYQVWAEQMELLLKQLKINYVLTEPCPNATLGEKDASAGKIAETKAAEKRWVNDDSLCRRNILNHLSDSLFNKYANRKMSAIELWEELKSVYLYEEYGTKRSQVKKYIEFQIVDEKSVVHQIQELNSIADSVAAVGMHIEENFHVSVIISKLPLSWKDFCIKLMCEEHLPFCKLMECVTKEEEYRNGVKQMGEPPSDNVRFHHANKGGLREADIKPPPGFQRKFESNGKNIACYICGQKGHISKNCWRWM* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3883 477 SUPERFAMILY ssDNA-binding transcriptional regulator domain 106 168 IPR009044 GO:0003677|GO:0006355
Mtr7g3883 477 Pfam gag-polypeptide of LTR copia-type 278 413 - -
Mtr7g3883 477 Pfam Transcriptional Coactivator p15 (PC4) 107 157 IPR003173 GO:0003677|GO:0006355
Mtr7g3883 477 Gene3D Transcriptional Coactivator Pc4; Chain A 96 173 IPR009044 GO:0003677|GO:0006355
Mtr7g3883 477 MobiDBLite consensus disorder prediction 64 86 - -
Mtr7g3883 477 Pfam Zinc knuckle 459 473 IPR001878 GO:0003676|GO:0008270
Mtr7g3883 477 Pfam DEK C terminal domain 5 59 IPR014876 -
Mtr7g3883 477 SMART c2hcfinal6 459 475 IPR001878 GO:0003676|GO:0008270
Mtr7g3883 477 PANTHER PBF68 PROTEIN 1 472 - -
Mtr7g3883 477 ProSiteProfiles Zinc finger CCHC-type profile. 460 473 IPR001878 GO:0003676|GO:0008270
Mtr7g3883 477 PANTHER PBF68 PROTEIN 1 472 - -
Mtr7g3883 477 SUPERFAMILY Retrovirus zinc finger-like domains 448 473 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3883 Mtr-Chr7 55644759 55648162 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Mtr7g3883 Retrotran_gag_2 3.7e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3883 - - cam:101512708 560.066