Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3878 ATGATCAACCATTCATATCTCAGATTCCACTGTGATATATGCTTAAAAATGGAAACAGGTGGAGTTGATAGTAGTATATTGTCATTGACTATGATGGAAGAGGCTGAACATCATCACCATCAGTTTTCTTCAATCTCAAAGCTACTCAACAATGCTCCCACCACTACCAGTGTCCATGATCTTCTTGAATGTCCGGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGTCACAATGGACATACCCTTTGTTCAAATTGTAAGACAAGGGTACACAACAGATGTCCAACTTGCAGGCAAGAGCTAGGCGATATAAGGTGTTTAGCATTGGAGAAAATAGCAGAATCACTTGAATTTCCTTGTAGATACATATCTCTTGGTTGTTCAGAGATATTTCCATATTTTAGCAAACTCAAACATGAGTCTATCTGTACCTTTAGACCATACAATTGCCCTTATGCTGGATCAGACTGTTCTGTTGTTGGAAATATTCCATACCTTGTTGCCCATTTAAGGGATGACCATGGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAATCAAATCCTACGGAAGTAGAAAATGCTACTTGGATGCTAACGGTTTTCCATTGTTTTGGTCAATATTTTTGTCTCCATTTTGAAGCATTCCAGCTTGAAACGTCACCTGTTTACATGGCGTTTCTTCGATTCATGGGTGATGACAGAGACGCCAAGAACTACAGCTACAGCTTAGAAGTGGGAGGAAATGGACGTAAACTAACATTTGAAGGGAGTCCAAGAAGCATTAGAGATAGTCACAAGAAAGTGAAGGATAGTCATGACGGCCTAATCATATACCGTAACATGGCACTTTTCTTCTCAGGTGGGGATAGAAAAGAGTTGAAACTAAGAGTAACAGGAAGGATATGGAAAGAGCAGCAAAACTCTGAATGCACACCCAACATGTGTAGCTAG 972 0.4002 MINHSYLRFHCDICLKMETGGVDSSILSLTMMEEAEHHHHQFSSISKLLNNAPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSNCKTRVHNRCPTCRQELGDIRCLALEKIAESLEFPCRYISLGCSEIFPYFSKLKHESICTFRPYNCPYAGSDCSVVGNIPYLVAHLRDDHGVDMHSGCTFNHRYVKSNPTEVENATWMLTVFHCFGQYFCLHFEAFQLETSPVYMAFLRFMGDDRDAKNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVKDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNSECTPNMCS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3878 323 SUPERFAMILY TRAF domain-like 117 309 - -
Mtr7g3878 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 184 305 IPR008974 GO:0005515
Mtr7g3878 323 ProSiteProfiles Zinc finger RING-type profile. 64 100 IPR001841 -
Mtr7g3878 323 CDD RING-HC_SIAHs 62 100 - -
Mtr7g3878 323 Pfam Seven in absentia protein family 106 305 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr7g3878 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 172 IPR013083 -
Mtr7g3878 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 15 317 - -
Mtr7g3878 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 116 IPR013083 -
Mtr7g3878 323 PANTHER UBIQUITIN LIGASE SINAT3 15 317 - -
Mtr7g3878 323 SUPERFAMILY RING/U-box 58 104 - -
Mtr7g3878 323 CDD Sina 178 306 - -
Mtr7g3878 323 ProSiteProfiles Zinc finger SIAH-type profile. 117 177 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3878 Mtr-Chr7 55587796 55589975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3878 15 312 C3H Transcription Factor Family AT2G41980 68.792 1.94e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3878 K04506 - gmx:100782764 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3878 7 55587796 55589975 Mtr7g3878 7 55587796 55589975 ECH