Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3870 ATGAAATCTGGAATTCAGAATCTGAAGCGATGTAGTAAGCTAGAAGAAGAATCTCCACCACAGATTCAGAAGAAGCCCAAACTCAATAACGCCTTTTACTCTTTCCATGATGGCGAGATCCACTCCAATTCAGCTTCCACAGATTTGAATATTGTAGCTGAAAATGCACCTCCATTGTCGCGAGCATCCAGAGGCCGCGTTAAAATGCTTCCATCCAAGTTCAAGGACTCCGTACTTCTCGGTACACAGAAGAAGAATAATCGACAAATACAAAACTCCAAGCTCAGTTTTGAAGGTGAGAGTAGTGATACTGTAATTAGATTTGTAAATAAGGGAAAGGAAAACAAATGCGATCCGAAAAAAGAGAGTGATAATGGTTTTGATGAATTTGATTATGAGAAGCATGCTAAGTCGTTTAAGAGCATTAAAAAGACGGTTAAAGGGAGTCGAATGTTATTGGTTAAAGCGGAGAGTGGAAATTGTTTTGATGAAAAGGGTAAAAAAGGGAAAGAGATTTTCAAACTAGTGGATTTTCATTTGGGTGATATTGTTTGGGCAAAATGTGGCAAGACTTTTCCGGCATGGCCTGCTGTTGTCATTGATCCTATTTCACAAGCTCCTGAGTCTGTTCTTAGACGTTGTGTTCCCGATGCAATTTGTGTTATGTTTTTCGGTTATTCGAAAAATGGAAAGCACAGGGACTATGCATGGGCGAAGCAGGGGATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCAGACCCGATTGTACAAGACCAAAGGAAGTGACTTTCACGAGGCAATGGAGGAGGCAATGTTGGCAGATAATGGCATTCTGGATCCACATTATAGAGCTAAGCAAATTGTGGAGGGTGCGACTTCCTGTGCTGAACAGGAATATCACTGCCAAGGCCAGGATACAATATCTTGTTATGGCTGTGGTTTGACGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACGTTTCAAGGATCTCGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATTGTAAGTTATCCACATCACAAACATACAAATCAAAAATCAAATCAGTAGAAAACAACCAAAAACCTGTGTTACCTGAAAATCTAGCGGTGGTGTGCAATGACATGAAAGGAATATACTTTCCAAAGCTTCATTTAGTTTTGTGCAAGTGTATCACGTGTGGGTCAAAAAAGCAGGCATTGGCAGAATGGGAACGGCATACAGGTTGTACAGCCAAAAAATGGAAACATAGTGTGAAAGTAGAAGGCACAATGCAACCACTAATAAAATGGATCACGGAACACAATCCCCAAGCTGGAATTCCCATGAAGTTAAATCAGAAACAGGTGTTTTCCTTTTTGCAAGAAAAATATGAACCAGTTTATGCAAAATGGACAACAGAGAGATGTGCGATTTGCAGATGGGTAGAAGATTGGGAAGATAACAAGATTATTATATGTAACAGATGCCAAGTTGCTGTTCACCAAGAGTGCTATGGTGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGTAGAGTGTGTGAAACTCCAGATGTTGAAAGAGAGTGCTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTCCGGCCTGAAGTTGTTTTCCGAAACCACGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTCCTAGTTCCTTTTTGAAGACTTGTGTGATCTGTAAACAAAGTCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCACGTGATGTGTGCATCAAGGATGGGATATAGCATGGCGTTGCGTTCTACAGTGAAGAAGGGGACTCAAATAACACAGACGCTAATATATTGCGCAGTTCACAGGGTCCCAAATCCAGATTCAGTAGTGGTTGTGCATACCCCTCTGGGGGTATTCTCTCCAAGAACTTCACTTCAAAATCACAAGGGACGCTTTAGAGGATCAAAGCTTATTTCATCAAATAACTTAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCCAATATCTGCCGCCAAGTGTCGTGTTTACAAAAGGCCTCCCAATAAGAAGGATGATGCACCAATAATTCACTTGCTTGGGGGACCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAACAATACGGATGCTGGGGTGTTTTCTTCATTTAAGGAACGACTTCACCATTTACAGAAAACGGAAAACTGTAGAGTCTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTATCGTGGCGAACAGTTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGCGAGGAAGTGGTAATTGATGCAACTGATAAGGGAAATATTGCACGTTTAATAAATCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGGGAGATCAGGAGAGCAGGATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATACAGATGAGCGAGATGAACTCAAGGTTCCCTGCCATTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 2895 0.4145 MKSGIQNLKRCSKLEEESPPQIQKKPKLNNAFYSFHDGEIHSNSASTDLNIVAENAPPLSRASRGRVKMLPSKFKDSVLLGTQKKNNRQIQNSKLSFEGESSDTVIRFVNKGKENKCDPKKESDNGFDEFDYEKHAKSFKSIKKTVKGSRMLLVKAESGNCFDEKGKKGKEIFKLVDFHLGDIVWAKCGKTFPAWPAVVIDPISQAPESVLRRCVPDAICVMFFGYSKNGKHRDYAWAKQGMVFPFLEFMDRFQGQTRLYKTKGSDFHEAMEEAMLADNGILDPHYRAKQIVEGATSCAEQEYHCQGQDTISCYGCGLTLPCKTMKKIKDSSCAPQHYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKRFKDLENIDYYCPDCKGKSDCKLSTSQTYKSKIKSVENNQKPVLPENLAVVCNDMKGIYFPKLHLVLCKCITCGSKKQALAEWERHTGCTAKKWKHSVKVEGTMQPLIKWITEHNPQAGIPMKLNQKQVFSFLQEKYEPVYAKWTTERCAICRWVEDWEDNKIIICNRCQVAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIPPSSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMALRSTVKKGTQITQTLIYCAVHRVPNPDSVVVVHTPLGVFSPRTSLQNHKGRFRGSKLISSNNLELLEPSTSEHYEVEPISAAKCRVYKRPPNKKDDAPIIHLLGGPNLHSLSAITQLNNNTDAGVFSSFKERLHHLQKTENCRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKTNISAGEELTYDYLFDTDERDELKVPCHCKAPNCRKFMN* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3870 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 405 IPR013083 -
Mtr7g3870 964 Pfam PHD-finger 548 582 - -
Mtr7g3870 964 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 964 IPR025780 -
Mtr7g3870 964 SMART PWWP_4 178 247 IPR000313 -
Mtr7g3870 964 SMART PHD_3 351 403 IPR001965 -
Mtr7g3870 964 SMART PHD_3 535 582 IPR001965 -
Mtr7g3870 964 SMART PHD_3 646 702 IPR001965 -
Mtr7g3870 964 Gene3D - 175 279 - -
Mtr7g3870 964 CDD PHD_ATX3_4_5_like 535 581 IPR042011 -
Mtr7g3870 964 SMART PostSET_3 948 964 IPR003616 -
Mtr7g3870 964 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 964 - -
Mtr7g3870 964 SUPERFAMILY FYVE/PHD zinc finger 349 410 IPR011011 -
Mtr7g3870 964 Pfam PHD-zinc-finger like domain 589 701 - -
Mtr7g3870 964 ProSiteProfiles Extended PHD (ePHD) domain profile. 587 702 IPR034732 -
Mtr7g3870 964 PANTHER PHD FINGER PROTEINS 1 964 - -
Mtr7g3870 964 Pfam SET domain 833 938 IPR001214 GO:0005515
Mtr7g3870 964 SUPERFAMILY FYVE/PHD zinc finger 534 598 IPR011011 -
Mtr7g3870 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 530 584 IPR013083 -
Mtr7g3870 964 SUPERFAMILY SET domain 816 961 IPR046341 -
Mtr7g3870 964 ProSiteProfiles SET domain profile. 822 939 IPR001214 GO:0005515
Mtr7g3870 964 ProSiteProfiles PWWP domain profile. 180 249 IPR000313 -
Mtr7g3870 964 ProSitePatterns Zinc finger PHD-type signature. 536 581 IPR019786 -
Mtr7g3870 964 Pfam PHD-finger 351 404 IPR019787 -
Mtr7g3870 964 Gene3D SET domain 761 964 IPR046341 -
Mtr7g3870 964 ProSiteProfiles Zinc finger PHD-type profile. 533 584 IPR019787 -
Mtr7g3870 964 CDD SET_SETD1-like 811 960 - -
Mtr7g3870 964 SMART set_7 822 945 IPR001214 GO:0005515
Mtr7g3870 964 MobiDBLite consensus disorder prediction 1 24 - -
Mtr7g3870 964 CDD PHD_TCF19_like 352 402 - -
Mtr7g3870 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 703 IPR013083 -
Mtr7g3870 964 ProSiteProfiles Post-SET domain profile. 948 964 IPR003616 -
Mtr7g3870 964 SUPERFAMILY Tudor/PWWP/MBT 175 277 - -
Mtr7g3870 964 Pfam PWWP domain 181 275 IPR000313 -
Mtr7g3870 964 ProSiteProfiles Zinc finger PHD-type profile. 349 405 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3870 Mtr-Chr7 55520113 55528196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3870 536 688 C2H2 Transcription Factor Family AT3G14740 34.568 1.06e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr7g3870 zf-HC5HC2H_2 7.8e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3870 - - lja:Lj1g3v5034780.1 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3870 7 55520113 55528196 Mtr7g3870 7 55520113 55528196 ECH