Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3868 ATGGAACAAGAAAAGAGCCATAGAATGTTCAATCTATTCGTGAAGCACTTGAACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTTTCCGCTACTTCAATCAAAGATCGTCTTTTCCATCTCACCGGAATCCCAATCCAACACCAACGCCTCGTCACCGGTTTCCGCCACCTCAACGATGATAATTCGGAGATATGTTGTTCGCCGGAAGGTGGAAACATGTTCCCCTCCGTTCGTCTTCTTCTTCGTCTGAAAGGTGGGAAAGGAGGATTCGGATCGTTGCTTCGTGGAGCAGCGACGAAAGCTGGGCAGAAGAAGACGAATAACTTCGACGCTTGTAGGGATATGAGTGGGAGAAGGTTGAGGCATGTTAATGCGGAGAAGAGGTTGGAGGAGTGGAGAGAAGGGGAAGAAGATAGGAAGCTTGAGAAAACGGCGGAGGAGTTTTTGAAGAAACAGATGAAGAAGAATAATAAGGGGAAGGGGAAGAATGGTGATGTTGAGGCTCAGAAGTATGTTGCTAAGTATAGGGAACAATCTGAACGTTGTGTTGCAGAGGTTGCTGAGTCTGTTCTGGATTCCATTCGATATGCTAAGCGTAAATCTTCACCTATATCGGAAGGTTCTCCTTCTCGTGATCAGAAGAAGTTGAAGATATGGATGGGGAAGAGGGCATTGAATGAAAGTGATGATGATTCTGATGGAGATGTTACTGATGATGAGGGGGAAACTGAGAAATCTGTTTTGTTAAATAGTCAGAATGAGTCTGGGTTAAATAAGGCTGAAGGCAGTTCTGATTCTGTGGCCGGTTTCAAGCGGGATGGAGACTCTTCTGGGGTTGGTTCGTGTGAGAGTGGATCCGAAGAAGAAAAGGAAACTGTTGTAGAAGGCAAAGTGGAAATTGTTGAAAGATCCCAGAGTACTGAAAGTATTGAGGCAAAACCGAGCATTGCTGCTGAAACCATGGTAAATGATGAAATGATGGAGGCTAATGCTGTGCCTTGTTCAGAGACCTTGGATTCTTTAATTAGTGTTCAAGATAATGATTATCAGGATAGCCAGGTTGGTGGCACCGGTGCTCAAGTCTCAAATGTTGTGAGCTCTGAAATTGTGTCCAATGACATGGAAATTGATGGTTCTCTTGAGCATAAAACAGTGGTCATTGAAGAAAGCTTGCCAAGCAATAGTGTTCCAGCAAAGAAGGAGCCTCTTAATTTTGATGCTTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAATTTGAAGACTGAACTCCAGTCACGCGGGTTAAAATTTGGAGGTACATTGCAGGAACGTGCTGCAAGGCTTTTTCTTTTAAAATCCACTCCCCTGGATAAACTTCCGAAGAAACTGCTAGCAAAGAAATGA 1401 0.4404 MEQEKSHRMFNLFVKHLNGKTLTLLFPSPILSATSIKDRLFHLTGIPIQHQRLVTGFRHLNDDNSEICCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWREGEEDRKLEKTAEEFLKKQMKKNNKGKGKNGDVEAQKYVAKYREQSERCVAEVAESVLDSIRYAKRKSSPISEGSPSRDQKKLKIWMGKRALNESDDDSDGDVTDDEGETEKSVLLNSQNESGLNKAEGSSDSVAGFKRDGDSSGVGSCESGSEEEKETVVEGKVEIVERSQSTESIEAKPSIAAETMVNDEMMEANAVPCSETLDSLISVQDNDYQDSQVGGTGAQVSNVVSSEIVSNDMEIDGSLEHKTVVIEESLPSNSVPAKKEPLNFDAFNSAAELEVLGLENLKTELQSRGLKFGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3868 466 MobiDBLite consensus disorder prediction 249 265 - -
Mtr7g3868 466 MobiDBLite consensus disorder prediction 287 309 - -
Mtr7g3868 466 PANTHER SPLICING FACTOR SF3A-RELATED 9 465 - -
Mtr7g3868 466 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 155 IPR024974 -
Mtr7g3868 466 Pfam Replication stress response SDE2 C-terminal 398 465 - -
Mtr7g3868 466 Gene3D - 1 110 - -
Mtr7g3868 466 Coils Coil 412 432 - -
Mtr7g3868 466 MobiDBLite consensus disorder prediction 226 316 - -
Mtr7g3868 466 SUPERFAMILY Ubiquitin-like 6 65 IPR029071 -
Mtr7g3868 466 ProSiteProfiles Ubiquitin domain profile. 10 89 IPR000626 GO:0005515
Mtr7g3868 466 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3868 Mtr-Chr7 55509038 55511761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3868 390 465 C2H2 Transcription Factor Family AT5G06160 44.737 3.03e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3868 K25059 - gmx:100781694 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3868 7 55509038 55511761 Mtr7g3868 7 55509038 55511761 ECH