Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3829 ATGCAGCAGCATTCGGTTATGGCGGAATCGAAAGAATTGAAAGAACGGTTATGGAAACTTGTTAAAACTATCGTTGACTCTGATGATGACTATTCTCTGCAAACCACCGATGATGCTATCTCTACTCTTTCTTCTCTCAAAGATTTCAAAATCAAGAACAAGAACAAGAACTCTCTTAGTAGTAAGAATGGAACAACAAAATCTTTCTCTCATAAATTTGACCATTTTGCCCCTCCTTCTCATTTTCTTTGCCCTATTTCTTCTCAATTGATGATCGACCCTGTTATTTTGTCCACCGGACAGACTTATGATCGGCCATTCATCCAGAGGTGGTTGAATGAAGGCAAAAGAACATGCCCTCAAACCCAGCAAGTTCTTTCTCACACAATTCTTACTCCTAATTACTTGGTCCGAGACATGATTGCGCAGTGGTGTAAGGAGCGTGGACTTGAGCTACCACAGCCTTCTGCTCGGGACACGGATGAAGTGGTGACTAATGCAGACAGAGACCGTTTAAATGTATTGCTTCATAAGTTATCGTGTTCTGTTTCTGATCAGAAAGCGGCTGCGAAAGAGCTTCGGTTGTTAACAAAGCGGACACCTTCCTTTCGAACCCTTTTTAAGGAGTCTGGTGATGTGATCACACAGTTGCTTCATCCATTATCACCAGGCAGTGCTTGTCCTCACCCTGATCTTCAAGAGGATTTGATCACAACTATTCTGAATCTCTCAATTCTTGATGATAATAAGAAAGTGTTTGCAGAGGATCCAACCCTCATTAACCTGCTGATTGATGCCATGAAATGGGGAACCATTCCAACAAAAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCAATCGATTCCAACAAGCTCATCATTGGAAAATCTGGAGCTATCAAACATTTGGTTGGCCTTCTAGATGAGGGAGATACATTAGCCATGAAAGATGCTGCATCAGCCATATTTAACCTATGTCTTGTTCATGAGAATAAAGGGAGGACCGTGCGAGAAGGGGCAGTTAGGGTAATTTTGAATAAGATCATGAACAGCATTCTAGTTGATGAGCTGTTGGCTATACTGGCACTCCTCTCCAGTCATCCCACGGCTGTTGAAGAAATGCGCGATTGTGGTGCAGTTCCTTTCTTACTGAAAATTATAAGGGAGAGCACATCAGAAAGATGCAAAGAAAATTGCATTGCAATCCTATATACAATCTGTTATAATGATAGAACAATGTGGAGGGAAATCAAAGAAGAAGAAAAGACCAATGGGACGTTATCTAAGCTCGCACAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTAGCGGTATACTGGAGAGGGTCAACAGATCTCCATCCTTAACTCACACTGCTTAG 1383 0.4208 MQQHSVMAESKELKERLWKLVKTIVDSDDDYSLQTTDDAISTLSSLKDFKIKNKNKNSLSSKNGTTKSFSHKFDHFAPPSHFLCPISSQLMIDPVILSTGQTYDRPFIQRWLNEGKRTCPQTQQVLSHTILTPNYLVRDMIAQWCKERGLELPQPSARDTDEVVTNADRDRLNVLLHKLSCSVSDQKAAAKELRLLTKRTPSFRTLFKESGDVITQLLHPLSPGSACPHPDLQEDLITTILNLSILDDNKKVFAEDPTLINLLIDAMKWGTIPTKSNAAAAIFTLSAIDSNKLIIGKSGAIKHLVGLLDEGDTLAMKDAASAIFNLCLVHENKGRTVREGAVRVILNKIMNSILVDELLAILALLSSHPTAVEEMRDCGAVPFLLKIIRESTSERCKENCIAILYTICYNDRTMWREIKEEEKTNGTLSKLAQCGTSRAKRKASGILERVNRSPSLTHTA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3829 460 Pfam U-box domain 79 148 IPR003613 GO:0004842|GO:0016567
Mtr7g3829 460 PANTHER U BOX DOMAIN-CONTAINING 6 458 - -
Mtr7g3829 460 Gene3D - 175 455 IPR011989 -
Mtr7g3829 460 SMART Ubox_2 81 144 IPR003613 GO:0004842|GO:0016567
Mtr7g3829 460 SUPERFAMILY ARM repeat 180 450 IPR016024 -
Mtr7g3829 460 SUPERFAMILY RING/U-box 74 153 - -
Mtr7g3829 460 SMART arm_5 288 328 IPR000225 GO:0005515
Mtr7g3829 460 SMART arm_5 368 409 IPR000225 GO:0005515
Mtr7g3829 460 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515
Mtr7g3829 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 151 IPR013083 -
Mtr7g3829 460 CDD RING-Ubox_PUB 82 124 IPR045210 -
Mtr7g3829 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 458 - -
Mtr7g3829 460 ProSiteProfiles U-box domain profile. 77 151 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3829 Mtr-Chr7 55166616 55169345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3829 140 460 U-box Gene Family AT3G07360 58.282 3.03e-124 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3829 - - gmx:100806619 610.912