Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3812 ATGGTTCCAAAAATGTTGAAGTTCTCTCGCATGCTTCATTCATCTTCCAGGAATCATCTATTGGAAGTTCTTTACGCTAGGGATTTCTCTACTGCCACAAATAACAACTATTCTGCTAAAGGGTATACTTCAGATCGTATCTTTGCTCCTTATTCTGTTTACAAGGGCAAAGCTGCGTTCTCACTCAGTCCTTGTCTTCCTACTTTTACTAAGTTGGATTCTGGGGCTCTTGTGGTTGATCGTCACGGTTCCATAATGATGAGTTTCATGCCTGCTATTGGCGAGCGCAAATATGACTGGGAGAAGAGACAAATATTTGCCCTATCAGCTACTGAAGTCGGTTCTTTGATAGCCATTGGTCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGTCAAGTAAGGAAAAGTTTGTCAATTAAGCCTCATAGCAATGGCTACTTTGTCTCTCTGTCTGTTGTTAACTCCGTGTTAAATACCAAAGACAATTTTAGTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGATCGTCTAACTAATCAGCAGTCCAGTGGGACAGTCAGCTTTCAACCAAAGATGAACTCACAAATTTTAGACTTGGAGTGGGAAAAGTGA 681 0.4126 MVPKMLKFSRMLHSSSRNHLLEVLYARDFSTATNNNYSAKGYTSDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRHGSIMMSFMPAIGERKYDWEKRQIFALSATEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFVSLSVVNSVLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSGTVSFQPKMNSQILDLEWEK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3812 226 Pfam Whirly transcription factor 53 185 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mtr7g3812 226 Gene3D Transcriptional Coactivator Pc4; Chain A 37 208 IPR009044 GO:0003677|GO:0006355
Mtr7g3812 226 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 16 226 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mtr7g3812 226 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 16 226 - -
Mtr7g3812 226 SUPERFAMILY ssDNA-binding transcriptional regulator domain 44 207 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3812 Mtr-Chr7 54971546 54975046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3812 5 226 Whirly Transcription Factor Family AT1G71260 57.983 1.03e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Mtr7g3812 Whirly 1.9e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3812 - - gmx:100817863 326.25