Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3810 ATGGAGGAGGATGAAGAGGAAGAGGAAGAGGAGGTTGCACAGGGCTTAGACGAGTCTGTTATAAAAGCTATTCCGTCTTTCATCTACACCACCGCAAAGTCTGAACAAGAAGAAGAATTTCGTGCTGAGTGTGCAGTTTGCTTGGAGGAGTTCCAAGATAATAATCACATCCGTACCCTCCCTATTTGCTCTCACACTTTCCATCTCAATTGCATTGACGTTTGGCTCCGTTCAAACGCTAGCTGTCCTGTATGTCGCTCCTGTCTTGTTGAGGAGGACTATCTGACCAAATGCTCTAATGCATCTAGTTCCCAGCGGACCTTGTCGTTGGAGAGAATGGTCGTCATCGACATCCCTGCCACCACATCACCATCGTAG 378 0.4762 MEEDEEEEEEEVAQGLDESVIKAIPSFIYTTAKSEQEEEFRAECAVCLEEFQDNNHIRTLPICSHTFHLNCIDVWLRSNASCPVCRSCLVEEDYLTKCSNASSSQRTLSLERMVVIDIPATTSPS* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3810 125 ProSiteProfiles Zinc finger RING-type profile. 44 86 IPR001841 -
Mtr7g3810 125 Pfam Ring finger domain 43 86 IPR001841 -
Mtr7g3810 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Mtr7g3810 125 SMART ring_2 44 85 IPR001841 -
Mtr7g3810 125 SUPERFAMILY RING/U-box 24 92 - -
Mtr7g3810 125 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 91 - -
Mtr7g3810 125 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 91 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3810 Mtr-Chr7 54944070 54944447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3810 13 124 Rapid Response to Elicitors AT3G05200 39.286 1.47e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3810 - K19041 mtr:MTR_7g116210 111.309