Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3809 ATGGAGAATGATATCTTAGAGGCTCTGTTATCTGTCACCTTGTTGGCATTTGCCACAACAACCTGTTCCCTCCTTATAACTTGCTTCATAGTCCACACTTACCGCCGGTTCCTCTCTAACTCCTCCTCCTCCTTGAGCGAAAGGGAGAACCTTCGATATGACGTCGACACAATGATGGTGGAGGAGGAGGAGGCTCCACAGGGCTTACATGAGTTTGTTATAAATCTTATTCCGTCTTTCATCTACAATACTACTACTAAGTCTGAACAAGAAACTTGTTCCGTTTGCTTGACTGAATTCAAAGATAATGATCATGTTCGTACCCTCCCTCTTTGCTCCCACATTTTTCATCACGATTGCATTGATGTTTGGCTTCGTTCAAACACTAACTGTCCTCTATGTCGCTCCCTTATTTGCTGTCATCTCTGTTGTTTACTTACATCCATCGCCAACAAGGACGGACGGGTGGACTTTCCCGTCTTACCCCCTTATTCATTTGCTTCTGAGCGAAGCTTGTAG 519 0.4451 MENDILEALLSVTLLAFATTTCSLLITCFIVHTYRRFLSNSSSSLSERENLRYDVDTMMVEEEEAPQGLHEFVINLIPSFIYNTTTKSEQETCSVCLTEFKDNDHVRTLPLCSHIFHHDCIDVWLRSNTNCPLCRSLICCHLCCLLTSIANKDGRVDFPVLPPYSFASERSL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3809 172 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Mtr7g3809 172 SMART ring_2 93 134 IPR001841 -
Mtr7g3809 172 CDD RING-H2_PA-TM-RING 92 135 - -
Mtr7g3809 172 Pfam Ring finger domain 92 135 IPR001841 -
Mtr7g3809 172 SUPERFAMILY RING/U-box 73 140 - -
Mtr7g3809 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 141 IPR013083 -
Mtr7g3809 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 16 140 - -
Mtr7g3809 172 PANTHER RING-H2 FINGER PROTEIN ATL65 16 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3809 Mtr-Chr7 54938909 54939427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3809 31 138 Rapid Response to Elicitors AT4G15975 40.741 2.28e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3809 - K19041 mtr:MTR_7g116210 244.202