Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3808 ATGGATAATTATATCTTTGATATTCTGGTGATTGTCTTCTCTTCGTTTCTCGCAGCATCGTGTTTCGTACTTATCGCTTTAATCATAGTCCACACTTGCCGCCGGTTCCACCCTAACTCCTCCTCCTCGTTGAGCGACTTGGAATCCCTTGAATATGACGTCGAGTCAACAACAACGGAGGAGGAGGAGGCTCCACATGGCTTAGATGAGTCTGTTATATATGCTATTCCGTCCTTCATCTATACCACCACAAAGTCTGAACAAGAAGAAGAATCTCGTGGTGAGTGTGTTGTTTGCTTGGAGGAGTACGAAGATAATGATCACATTCGCATCCTTCCGTTTTGCTCCCACACTTTCCATCTCAATTGTATCGACGTTTGGCTTCGTTCAAACCCTAGTTGTCCTTTGTGTCGCTCATGTCTTTACTTTTTCGAGGAGGACTTTATGTTGAAACGCTCTAATGCATCTGGTTCCGAGCGGAGCTTGTCGCCCGAGAGAATGGTTATCATCGACATCCCTGCCACCGCATCCCCATCGTAG 540 0.4611 MDNYIFDILVIVFSSFLAASCFVLIALIIVHTCRRFHPNSSSSLSDLESLEYDVESTTTEEEEAPHGLDESVIYAIPSFIYTTTKSEQEEESRGECVVCLEEYEDNDHIRILPFCSHTFHLNCIDVWLRSNPSCPLCRSCLYFFEEDFMLKRSNASGSERSLSPERMVIIDIPATASPS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3808 179 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 148 - -
Mtr7g3808 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 148 IPR044675 -
Mtr7g3808 179 SUPERFAMILY RING/U-box 80 144 - -
Mtr7g3808 179 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Mtr7g3808 179 Pfam Ring finger domain 95 138 IPR001841 -
Mtr7g3808 179 SMART ring_2 96 137 IPR001841 -
Mtr7g3808 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 142 IPR013083 -
Mtr7g3808 179 CDD RING-H2_PA-TM-RING 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3808 Mtr-Chr7 54932220 54932759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3808 64 141 C3H Transcription Factor Family AT3G18930 48.235 4.29e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3808 - K19041 mtr:MTR_3g078450 126.331