Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3646 ATGAGTCGCCGGTCGAGTCGAACAATATATGTCGGCAATCTTCCTGGTGACATTCGTTTGAGAGAAGTAGAGGATCTTTTCTACAAATTTGGTCCTATCGTTGACATTGAATTGAAGATTCCTCCAAGACCACCGGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCGTTATCGAGATGGATACAAGTTTGATGGCTTTCGATTAAGAGTTGAACTTGCACATGGTGGGCGGGGATATTCATCATCTGTAGACCGATATAGTAGTTATAGTAGTGGTAGCCGTGGAGTTTCCAAGCATTCTGAGTATCGTGTTTTGGTCACTGGATTACCTCCTTCGGCTTCATGGCAAGACCTGAAAGATCACATGCGCAGAGCTGGTGATGTATGTTTCTCTCAAGTTTTCCGTGACCGAGGTGGCATGACTGGGATAGTGGAGTATACAAATTATGAAGATATGAAATATGCTATTAGAAAACTTGACGACTCAGAATTCCGAAATGCGTTCTCTTGGGCATACATACGAGTGAGGGAATATGATCGACGGAGATATACTAGGAGTCCCAGTTGTGATACAAGGAGGAGTTATTCTAGAAGCCCAAGCCGCAGTCCATATATGTCACGAAGTCGTAACCGCAGTCAAAGTTATAGCTATAGTAGCAAGAGCAGCAGAAGCTTGTCTCCAAAAGTGAAACGCACTCGACGGTCTTTATCCCGTTCAAGGTCATTGTCAAGATCAGAATCTGCACGTTCATCTCCTGAACCTCGCAGGAGCCGAAGTCCTAGGAGCTTATCACAATCTCGTTCACCTTCGGTGAGATCTGAACACAGCCAATCTGTCAACTCTGGAGACCACGATTGA 879 0.4482 MSRRSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEFRNAFSWAYIRVREYDRRRYTRSPSCDTRRSYSRSPSRSPYMSRSRNRSQSYSYSSKSSRSLSPKVKRTRRSLSRSRSLSRSESARSSPEPRRSRSPRSLSQSRSPSVRSEHSQSVNSGDHD* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3646 292 SUPERFAMILY RNA-binding domain, RBD 5 174 IPR035979 GO:0003676
Mtr7g3646 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 173 IPR000504 GO:0003723
Mtr7g3646 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mtr7g3646 292 MobiDBLite consensus disorder prediction 264 284 - -
Mtr7g3646 292 CDD RRM2_SF2_plant_like 109 184 - -
Mtr7g3646 292 CDD RRM1_SF2_plant_like 8 79 - -
Mtr7g3646 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Mtr7g3646 292 Gene3D - 109 186 IPR012677 -
Mtr7g3646 292 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mtr7g3646 292 SMART rrm1_1 110 181 IPR000504 GO:0003723
Mtr7g3646 292 MobiDBLite consensus disorder prediction 196 232 - -
Mtr7g3646 292 MobiDBLite consensus disorder prediction 189 292 - -
Mtr7g3646 292 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 288 - -
Mtr7g3646 292 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 288 - -
Mtr7g3646 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mtr7g3646 292 Gene3D - 2 108 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3646 Mtr-Chr7 53431556 53438266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3646 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 1.42e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3646 K12890 - gmx:100794282 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3646 7 53431556 53438266 Mtr7g3646 7 53431556 53438266 ECH