Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3625 ATGGTAAAGGGAAGAAAGGTTAGTAGCAAACGTGATTTGAGAAAGAGGGTTAGGTCAAAGGGCAGTGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCCGGGAATGTGTCTGATTGTCCAGAGGATGATTATTTTTCTTTGGATGGATGTGCGGCTGAGGATAGTTTTGACGGGTTTATAGAAGACGGGGATTCGGAAAAGGAGGTGATTCAACGGGTGACGAAATTTAATAGATCGAGGGCTAAAACTGGTGTAAGGCGTCAGCGGACTAATGTAAGTAAAGCCTCGAGGAAGAGACAGAGGGTTACTTATGCAGAACAACCAGAAGAAGAAGAAGAAGAACAAGATGAAGAAAAAGGAGAAGAAGAGGAAGAAGTAGAAGAAGAGGAGGAGGAGGAAGAAGAAGATGATGATGATTACAATGATGTTGATGAAGAGGAGGATGAGGAGGAAGAGGAAGAGGAAGAAGAAGTGGAAGTGGAAGTGGAAGAGGAAGAGGAAGAGGAAGAAAAAGACGAAGTGGAAGTGGAAGAGGTAGGTGAAAATGATGAGGATGATGAATTTAAACCTGAGGAAGAAGATTTCACAGATGAGGAGGAAGAAGAAACAAGGGGCAGAAAGAAGAAAAAGGATAATTCCATTTATGAAGACGAAGAATTTAAACCGGAGGACGAAGATTACACAGATGAGGAGGAAGAAGAAACAAGGCGCATTAAGAAGAAAAATAATGGCACGAAGATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGTTCTGGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGACGAAAGAATGGAGGATCAACGAGGAAAGTACAGTGTGATGATGCAGATGATTTTTTGGATAATGTCCCAGCCATCAGAACAAATAGCAGAAAGAGATCAGTCCTGAAAAGGAGAAGGGTTATCCTTGAAGATGCCAATTCCGGCTCAGATTGTGAGTCTAGACCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCGTGCAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGGAAAATGAAGTGGTTGGACTATATGAAGATCTACATCAGCAATGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGACTTGAAGAGTGAGGTGGGAAAACAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAACAGTTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCGGAAGAGGCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAATCCGTTATGTGTTCAGAGTGTCATCTAGGTGGAGACGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGGCAACTCAAAGCCTGCCTTCCCGGCCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACCTGATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTACCGAAGGAGCTTCTCCGATGTCTGGAGGTGGGGCACCAACTTTATCAGAGAGACGATGGATACACCGTCAAGTTCAGCAGCTACAAATTCAGCAGCTACGTTCAATTGATAGAATGGCTTCTACAACTGGCAGAACTAACGGTGTTTCAGCTACCGGTACATTAAGTAACTTGAATAGCTCTGAAATTAATAGGGAACCAAGTTCTCAACATATAAGAACACAGGACGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTTATGCAGAATGGAGACCCCTTCTCCATAAGAATGAGCAATTCAAGGGGCCCAGTGGTTCAGGATTCAACCATGTTTTCGAACGGGCCTGTGAATGCAGCTATATGGCCTGAAATTTTGGGGACATCGACCTTATCAGATTATGGACCAATCCACCCATGCAGCAGCAGATCAAACATTGTCACTGAGGTTGGTATACCCGCTACTGTCAAAGAAGAAGATAACTTGCACATTGTAAAGGAGCGATTGCAGTCAATGGTTAAAAGTCATCTGAAGAGATTGTCTCAAGATGCTGATTTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTCGCTGCTTGTGGACTCGAGCACAATACGAGTGAGGTTTGTACTGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAATGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGTATTTTGGACACAAGAATGTCTTCACAGTGGTTACGATTAGGACTTTAG 2715 0.4302 MVKGRKVSSKRDLRKRVRSKGSGSDDSDEDYVVSDDAGNVSDCPEDDYFSLDGCAAEDSFDGFIEDGDSEKEVIQRVTKFNRSRAKTGVRRQRTNVSKASRKRQRVTYAEQPEEEEEEQDEEKGEEEEEVEEEEEEEEEDDDDYNDVDEEEDEEEEEEEEEVEVEVEEEEEEEEKDEVEVEEVGENDEDDEFKPEEEDFTDEEEEETRGRKKKKDNSIYEDEEFKPEDEDYTDEEEEETRRIKKKNNGTKMGKKKALKKRVSATSSRGRKRSGSGVSKKPKRKRRRKNGGSTRKVQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQVREAVQLCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRWIHRQVQQLQIQQLRSIDRMASTTGRTNGVSATGTLSNLNSSEINREPSSQHIRTQDVGTSYHTFFEERLGNNISPFMQNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPEILGTSTLSDYGPIHPCSSRSNIVTEVGIPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAACGLEHNTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDVVKSILDTRMSSQWLRLGL* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3625 904 MobiDBLite consensus disorder prediction 84 100 - -
Mtr7g3625 904 CDD RING-HC_Topors 426 468 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 392 415 - -
Mtr7g3625 904 PANTHER F18C1.6 PROTEIN 1 137 - -
Mtr7g3625 904 PANTHER F18C1.6 PROTEIN 138 893 - -
Mtr7g3625 904 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 563 IPR013083 -
Mtr7g3625 904 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 483 IPR013083 -
Mtr7g3625 904 ProSiteProfiles Zinc finger PHD-type profile. 513 562 IPR019787 -
Mtr7g3625 904 PANTHER F18C1.6 PROTEIN 1 137 - -
Mtr7g3625 904 PANTHER F18C1.6 PROTEIN 138 893 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 1 17 - -
Mtr7g3625 904 Pfam PHD-finger 516 561 IPR019787 -
Mtr7g3625 904 SMART ring_2 426 467 IPR001841 -
Mtr7g3625 904 Pfam Ring finger domain 425 468 IPR001841 -
Mtr7g3625 904 SUPERFAMILY FYVE/PHD zinc finger 488 561 IPR011011 -
Mtr7g3625 904 SUPERFAMILY RING/U-box 425 474 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 612 628 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 111 203 - -
Mtr7g3625 904 Coils Coil 113 186 - -
Mtr7g3625 904 SMART PHD_3 515 560 IPR001965 -
Mtr7g3625 904 ProSitePatterns Zinc finger RING-type signature. 445 454 IPR017907 -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 204 221 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 612 637 - -
Mtr7g3625 904 ProSiteProfiles Zinc finger RING-type profile. 426 468 IPR001841 -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 667 699 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 84 298 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 1 44 - -
Mtr7g3625 904 MobiDBLite consensus disorder prediction 246 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3625 Mtr-Chr7 53219679 53223480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3625 426 471 C3H Transcription Factor Family AT2G39100 45.652 1.36e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr7g3625 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3625 - - mtr:MTR_7g112410 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3625 7 53219679 53223480 Mtr7g3625 7 53219679 53223480 ECH