Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3560 ATGGCTTCCATAACCTCAATCGGTGCTTCCACCGCATGCAAACTTCCCTCTCTCGAACTCTACAAAAAACACAAACTCACTTCCATTCCCACTTCCTCCGTTAAATTCCACTTTTCCGACGGCAACAAATCCCGCCACATCAACCGTCTCGCCAATTTCAACTCCTCTGATAGGTTTCTTCCTTCCGCCGTTGCTACTCCCAATTCTTCATCTTCTTCACTTCTCAGTGACGAAGCATTTAAAGGATTAGGCTCTAGTTTCGACGGAGAATCTGAAGATGAAGATTTTCCGTCACGAACTACTTCTATTAACGCTGATGAACTTGACATTTCTAAACTCGATTTGCCTTCGCAGCTTGTTGATTCGCTACGTGACCGTGGGATTACTCAACTTTTTCCTATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGCAGAGATATTATTGCTCGTGCGAAGACTGGAACAGGGAAAACATTGGCTTTTGGAATTCCTATTATCAATGGTTTAGATGATGGTCAAGATTCCGGTCCTTACAGTCGCAGGCGTCTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTATCTCAAAACTGTTTGTATATATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCGCGTGGTGTTGATGTGGTTGTTGGAACGCCTGGTAGGCTGATTGACCTCATCAATGGGAACACACTTAAGTTGAGTGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAAGAGGATGTAGAAGTCATTTTGGAAAAGCTTCCAGCAAAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGGAAATACTTGAACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTATATGCTATATCGGCCACTTCCACTTCAAAGCGAACCATTCTTTCTGATCTTATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGTGATATATCTCAGCACCAGAGAGAAAGAACATTGAATGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCAACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCCGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCAGGAAAGCTAGGTACTGCCATTCTGATGTTCACAGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGTTGTAAATTTGAATTTGTTAACGCGCCGTCTGTGGAAGATGTTCTGGAGTCATCTGCTGAGCAAGTTGTTGTCACACTTAATGGAGTTCATCCAGAGTCTATTGCATTTTTCACCCCAACTGCACAGAAACTGATTGAAGAAAAAGGAACAACTGCCCTTGCAGCTGCACTGGCACAGATGAGTGGATTCTCCCAACCTCCGTCTTCCCGGTCTCTTATCACCCACGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTATATTCCAAAGCTGCTGATGAAGTTGGAAAAGTCCATTTAATTGCGGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTTGACAAGGACATACCAGCTGGAAACACTATTTCTAAAGTCACCAAGTTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCCGATAGAGAACGAAATAACCGAAGAGGAGGTTCTAGGGATGGGAGAGGTTTTAGATCCTCACGGGGATGGGATGGAGGCCGAGGCTCTGATGATGATTTTGGTGACTCGTCTAGGAGGGGTGGCAGAAGTTATAAATCTGGCAACAGCTGGTCCAAACCAGAAAGAAGCAGTAGGGATGATTGGCTAATTGGAGGCAGACAATCGAGCAGATCTTCTTCATCACCGAACAGAAGCTTTGCAGGGACCTGTTTTACTTGTGGGGAATCTGGGCATCGAGCGTCGGACTGTCCAAACAAGCGAGGCGACTTTTTTTAA 2262 0.4394 MASITSIGASTACKLPSLELYKKHKLTSIPTSSVKFHFSDGNKSRHINRLANFNSSDRFLPSAVATPNSSSSSLLSDEAFKGLGSSFDGESEDEDFPSRTTSINADELDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIINGLDDGQDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCIYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPESIAFFTPTAQKLIEEKGTTALAAALAQMSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARSVTGFLSDVYSKAADEVGKVHLIADERVQGAVFDLPEDIAKELLDKDIPAGNTISKVTKLPPLQDDGPPSDFYGKFSDRERNNRRGGSRDGRGFRSSRGWDGGRGSDDDFGDSSRRGGRSYKSGNSWSKPERSSRDDWLIGGRQSSRSSSSPNRSFAGTCFTCGESGHRASDCPNKRGDFF* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3560 753 MobiDBLite consensus disorder prediction 625 753 - -
Mtr7g3560 753 Pfam Zinc knuckle 730 747 IPR001878 GO:0003676|GO:0008270
Mtr7g3560 753 Gene3D - 109 319 IPR027417 -
Mtr7g3560 753 PANTHER - 58 743 - -
Mtr7g3560 753 MobiDBLite consensus disorder prediction 711 732 - -
Mtr7g3560 753 CDD GUCT_Hera 543 623 - -
Mtr7g3560 753 Pfam DEAD/DEAH box helicase 132 304 IPR011545 GO:0003676|GO:0005524
Mtr7g3560 753 CDD SF2_C_DEAD 329 458 - -
Mtr7g3560 753 CDD DEADc 119 316 - -
Mtr7g3560 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 470 IPR027417 -
Mtr7g3560 753 SMART helicmild6 369 449 IPR001650 -
Mtr7g3560 753 Pfam Helicase conserved C-terminal domain 341 449 IPR001650 -
Mtr7g3560 753 SUPERFAMILY Retrovirus zinc finger-like domains 712 750 IPR036875 GO:0003676|GO:0008270
Mtr7g3560 753 Pfam GUCT (NUC152) domain 536 636 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mtr7g3560 753 ProSiteProfiles Zinc finger CCHC-type profile. 732 747 IPR001878 GO:0003676|GO:0008270
Mtr7g3560 753 SMART ultradead3 127 332 IPR014001 -
Mtr7g3560 753 Gene3D - 330 533 IPR027417 -
Mtr7g3560 753 Gene3D - 721 751 - -
Mtr7g3560 753 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 58 743 - -
Mtr7g3560 753 MobiDBLite consensus disorder prediction 644 688 - -
Mtr7g3560 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Mtr7g3560 753 SMART c2hcfinal6 731 747 IPR001878 GO:0003676|GO:0008270
Mtr7g3560 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 315 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3560 Mtr-Chr7 52604674 52610380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3560 89 471 Eukaryotic Initiation Factors Gene Family AT1G72730 35.990 7.36e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3560 - - gmx:100779706 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3065 1 41934537 41939570 Mtr7g3560 7 52604674 52610380 ECH
Mtr7g3560 7 52604674 52610380 Mtr7g3560 7 52604674 52610380 ECH
Mtr7g3560 7 52604674 52610380 Mtr1g3065 1 41934537 41939570 PCT