Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3552 ATGGAAAAATTAATTATATGTGTTCTTATATTGTTAATGAATATGGTCACTACAGAACTCAGAGTAGAATCTGCTGTTTGGCAGTCAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGTGCATGTGGTTATGGAAATCTGTACACAGATGGATATGGTATAAAATCAGCTGCATTGAGTACTGCTTTGTTTAATGATGGGAAGTCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAAGGCAAGTTCCTCAATGGTGTCTCAGAGGCACTTCCATCACTATTACTGCCACAAATTTTTGTCCACCAAACTTTGCACTCCCTAATGACAATGGTGGTTGGTGTACCCCTAGACCTCACTTTGATATGTCTCAACCTGCCTTTCAGACTATTGCCAAATACAGAGCTGGAATTGTTCCCATTTTGTATAGGAGAGTTGGGTGCAAAAGAAGTGGAAACATAAGATTTACTATAAATGGGAGAGACTATTTTGAGTTGGTTCTTATAAGTAACGTAGGGGGAGGTGGAGAGATTTCAAAAGTTTGGATAAAAGGATCAAAAAAGAATAAATGGGAACCAATGTCAATGAATTGGGGTGCTAATTGGCAAAGCCTAAGCTATCTCAATGGTCAAAGCTTATCATTTAGAATTCAACTCAAAAATGGGAAGACTCGTACAGCTATTAATGTTGCACCTTCCAACTGGAGATTTGGCCAGTCTTACAAAAGTAACGTTCAGTTCTGA 762 0.3924 MEKLIICVLILLMNMVTTELRVESAVWQSAHATFYGGSDASGTMGGACGYGNLYTDGYGIKSAALSTALFNDGKSCGGCYQIVCDARQVPQWCLRGTSITITATNFCPPNFALPNDNGGWCTPRPHFDMSQPAFQTIAKYRAGIVPILYRRVGCKRSGNIRFTINGRDYFELVLISNVGGGGEISKVWIKGSKKNKWEPMSMNWGANWQSLSYLNGQSLSFRIQLKNGKTRTAINVAPSNWRFGQSYKSNVQF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3552 253 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Mtr7g3552 253 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Mtr7g3552 253 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Mtr7g3552 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Mtr7g3552 253 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Mtr7g3552 253 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Mtr7g3552 253 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Mtr7g3552 253 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Mtr7g3552 253 SUPERFAMILY PHL pollen allergen 156 249 IPR036749 -
Mtr7g3552 253 Gene3D - 13 155 IPR036908 -
Mtr7g3552 253 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Mtr7g3552 253 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Mtr7g3552 253 Pfam Lytic transglycolase 63 149 IPR009009 -
Mtr7g3552 253 Gene3D - 156 253 IPR036749 -
Mtr7g3552 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Mtr7g3552 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Mtr7g3552 253 SMART dpbb_1 62 149 IPR007112 -
Mtr7g3552 253 PANTHER EXPANSIN-A15 6 253 IPR002963 GO:0009664
Mtr7g3552 253 PANTHER EXPANSIN 6 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3552 Mtr-Chr7 52527260 52528552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3552 1 253 Expansin Gene Family AT4G01630 74.510 1.21e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3552 - - gmx:100787396 459.144