Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3550 ATGTATCCACTAACCATGGCGTTTTCATCCTCAACTCAACTGCTTCAATCTCACAACCCACTTTCTAATCTTCAGGGTAATTTTAGCCAAGATGCGTTGTCTATGGTTCAAAGGTCACATACCGTGTCACAAATTGGTTACAGTAAATCATTGTCATTAAAATCACATGTTGCTTTTAGGTTTTCTGCCACGCAACAATTTGGAGCAAGATCAATTTCATATAGTAGGAGAATCACATGTGCAGCAGCTGCTGAAAATGTTCAAGAGCTGCAAGCCAAAGTTACTACCAAATGTTTCTTTGACGTAGAAGCTGGGGGTGAATCTTTGGGCAGAATTGTTTTGGGCTTGTTTGGAGAGGTTGCTCCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGAGATAAAGGATATGGTTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAGGGAGGGGACTTCACCGAGGGAAATGGAACCGGTGGAGTTAGTATCTATGGTTCTAGTTTCGAAGATGAGAGTTTTGCATTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTTAAGACTCCGTGGTTAGACAATCGACATGTCGTGTTTGGACATGTTATTGATGGAATGGATGTTGTGAGGACACTTGAGTCTCAGGAAACAAGCAGGTTAGATATCCCTAAAAAGCCTTGCAGAATTGTTAATTGCGGAGAACTGCCCATAGATGGTTGA 786 0.4122 MYPLTMAFSSSTQLLQSHNPLSNLQGNFSQDALSMVQRSHTVSQIGYSKSLSLKSHVAFRFSATQQFGARSISYSRRITCAAAAENVQELQAKVTTKCFFDVEAGGESLGRIVLGLFGEVAPKTVENFRALCTGDKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGVSIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPKKPCRIVNCGELPIDG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3550 261 Gene3D - 81 260 IPR029000 -
Mtr7g3550 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 99 256 IPR002130 GO:0000413|GO:0003755
Mtr7g3550 261 SUPERFAMILY Cyclophilin-like 93 257 IPR029000 -
Mtr7g3550 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 52 260 - -
Mtr7g3550 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 52 260 - -
Mtr7g3550 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 100 255 IPR002130 GO:0000413|GO:0003755
Mtr7g3550 261 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 140 157 IPR020892 GO:0003755|GO:0006457
Mtr7g3550 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Mtr7g3550 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 157 IPR002130 GO:0000413|GO:0003755
Mtr7g3550 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Mtr7g3550 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 203 215 IPR002130 GO:0000413|GO:0003755
Mtr7g3550 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 216 231 IPR002130 GO:0000413|GO:0003755
Mtr7g3550 261 CDD cyclophilin_ABH_like 97 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3550 Mtr-Chr7 52518394 52521047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3550 110 254 U-box Gene Family AT5G67530 43.836 1.49e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3550 K03768 - gmx:100785805 401.364