Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3543 ATGTTTGATTCTAGCAACTCAGAGATGACAAAAAGCAATGGCCTAGGTTCCTCTCACATGTTCACATATTTAACTCCTCTCAAAAAACCAAGAGTGGATTCAAACCAAACTGCAACAACAAACTCACAGAAACAGTACTTGATGGGGTGTGAATATCAAAAAAATGGAAAAGTGAACTTCTCAAACTTTTCTATACCTGCAGTGTTTCTCAAATCAAATCAACAAAGAGTACAAGAGAAAGAATCAAAAGCAGTTGCTTGTACAAAATTTCAACAACAAAAACACTTAACTTTAAATGCTGCTACCAAATCAAACTCTGGATATGAAAGAAGTAGAGAATTACTACCAACTGTTGATGAACATTCTGAAGCTGCTGCTAGCCATACCAATGCACCTAGAATTAGAGGAAAGAGAAAAGCTAGTGCTATTAACTTATGTAATGCACAAAAACCATCTTCTGTATGTTCACTTGAAGCCTCAAATGATTTAAACTTTGGTGTTAGAAAATCACATGAGGACACTGATGACTCTCCTTATTTAAGTGATAATGATGAAGAAACACAAGAAAATATAGTGAAAGAAAAGCCAGTTCGAGAAGGAAACAGAGTCAAGAGAAGCTACAGGAATGCAAAAGTTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGAGCACTTTGTATGCCACTTAATCATTTTATGATGTTACCCGCACATCATATGAACATGAATATGAATATGAATGCACAGCATTTGATGATGGGTTTTAGGCCACACGTACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTACCACCACAAATGTCAATTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCTTCAACCACACCACCAACACCAACCACTTTTGGTAACCAGAATCAACCTGGAAGGACATGTGGCTAG 1122 0.3672 MFDSSNSEMTKSNGLGSSHMFTYLTPLKKPRVDSNQTATTNSQKQYLMGCEYQKNGKVNFSNFSIPAVFLKSNQQRVQEKESKAVACTKFQQQKHLTLNAATKSNSGYERSRELLPTVDEHSEAAASHTNAPRIRGKRKASAINLCNAQKPSSVCSLEASNDLNFGVRKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPLNHFMMLPAHHMNMNMNMNAQHLMMGFRPHVQFPIPQMGDGVTNNNNDRVQMFGFSNQLPPQMSIPNAPFIPPIIGNSSSTTPPTPTTFGNQNQPGRTCG* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3543 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 271 IPR036638 GO:0046983
Mtr7g3543 373 CDD bHLH_AtPIF_like 208 267 - -
Mtr7g3543 373 Pfam Helix-loop-helix DNA-binding domain 212 257 IPR011598 GO:0046983
Mtr7g3543 373 PANTHER TRANSCRIPTION FACTOR PIF3 1 364 IPR044273 GO:0003700|GO:0006355
Mtr7g3543 373 Gene3D - 204 266 IPR036638 GO:0046983
Mtr7g3543 373 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 364 - -
Mtr7g3543 373 MobiDBLite consensus disorder prediction 167 189 - -
Mtr7g3543 373 SMART finulus 214 263 IPR011598 GO:0046983
Mtr7g3543 373 MobiDBLite consensus disorder prediction 349 373 - -
Mtr7g3543 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3543 Mtr-Chr7 52437316 52439639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3543 58 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.118 1.07e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr7g3543 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3543 K12126 - gmx:100784724 231.876