Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3542 ATGGGAAAAACAAATAGTTCAAATTCTTCTTCATCTATTAGCAGTAACAGCAACCATAATCTTTATATTTCTACTGCATCCTCTCTTACACATCAACTTCCCACAGATCTTAGTCTTGGACTCACCATTTCTCCCACTCAACATTTTCATGTTGGCTCATCAATTTCAAGGGGGCAATGGCAACAAAACTATGACTACAATAGCTTGTATGTGAAGGTGTACATGGAAGGAATTCCAATTGGTAGAAAACTGAATATACTTGCTCATCAAAGTTACCATGAGTTAGTTAAGACTCTTGAGCACATGTTTGACACTACCATTCTATGGGGGAATGAGATGGATGGAGTGCAACCAGAAAGATGTCATGTGTTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTTTTATCGACTGTTAAGAGATTGAAGATCACAAGGGTAGACACATTTGGGTGTTAA 486 0.3827 MGKTNSSNSSSSISSNSNHNLYISTASSLTHQLPTDLSLGLTISPTQHFHVGSSISRGQWQQNYDYNSLYVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFDTTILWGNEMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3542 161 PANTHER AUXIN-INDUCED PROTEIN 65 160 - -
Mtr7g3542 161 PANTHER AUXIN-INDUCED PROTEIN 7 62 - -
Mtr7g3542 161 Pfam AUX/IAA family 65 155 IPR033389 -
Mtr7g3542 161 Gene3D - 62 160 - -
Mtr7g3542 161 SUPERFAMILY CAD & PB1 domains 63 153 - -
Mtr7g3542 161 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 160 IPR003311 GO:0005634|GO:0006355
Mtr7g3542 161 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 62 IPR003311 GO:0005634|GO:0006355
Mtr7g3542 161 ProSiteProfiles PB1 domain profile. 68 158 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3542 Mtr-Chr7 52424143 52425173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3542 71 153 B3 DNA Binding Superfamily AT2G46530 36.905 2.58e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr7g3542 AUX_IAA 2.7e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3542 K14484 - gmx:100783140 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3542 7 52424143 52425173 Mtr1g3092 1 42208232 42209572 PCT