Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3540 ATGGAAAACCACCACCACCGTGAATTATCCTTCTTAAGCTCCTCCGGCGACTTCCTCCACAACAACAGTATAGATCCTCCGATCAAAGAAATGGATTTCTTCTCATCATCACCTAACAAAAACAATAAAGAAGATGATCTTGATCAACATGGCAGCATCATCAAAGAAGTATCACCATTACCAACACTACTACTCACTCATCATGACCCTGTTAACACTGGATTGAATTTAATGTGTTCAAGTGCTGCAGTTTCAAAAGAAGAAAATCTTGAAAATTCTGAAACTGAGATGAGTATACTTGAAAGTGAATTGAGGAGGGTGCAAGAAGAGAATCATAAATTAAGAATTATGTTAGAACAAATTACCAAAAGCTATAGCCAACTACAAGCTCAGTTGTTCATCACTTTGCAGAAACAAAAACCAAACCATGGTCAGGCTTGTCCTCATGATCATCCTGCAGAAGATTCCTCACACTCATCCAAGTTAGAAGAACCCACACAAGACCTAATTCCTTTCAAAAAAGCCAGGGTTTCCATACGTGCAAGATCAGAAGCTCCCCTGATCAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGTCCTCGTGCCTACTATCGTTGCACTATGGCTGTAGGATGTCCAGTTCGCAAACAGGTCCAAAGATGTGCAGAAGACAAGACAATACTAATAACAACATATGAAGGCAACCACAATCACCCACTCCCACCAGCTGCAACTGCCATAGCACACACAACATCAGCAGCTGCAGCAATGCTGCTATCAAGTTCAACCTCATCAACACTAAGAAAGGAATCAGCAACAGGTTATTTATCTAATTCATTTCCCTATGCAACAATGGCAACCTCAACCCTATCAGCTTCTCAGCCCTTCCCAACAATCACCCTCGACTTCACACAAAACCATAACCTCTCCATGCATCATAACCGAGTTCCTCTACCATTGTTCTTCTCACACAAGCTACCACCATTACTTCAACTAGGGCAACCGCCACCTTCATCTATGGTTGAGAGTGTTAGTGCAGCCATTTCTTCAGATCCAAATTTTACTACAGCTTTGGCCGCAGCGATTTCATCAATCATTGGACCACAAAGAAGTGGTGATGGTAATAATAATCTTGCAGGCGTAGTTCCAGGTTCACCTCAGCTTCCTCAATCGTGCACTACATTCTCTACCAATTAG 1221 0.4226 MENHHHRELSFLSSSGDFLHNNSIDPPIKEMDFFSSSPNKNNKEDDLDQHGSIIKEVSPLPTLLLTHHDPVNTGLNLMCSSAAVSKEENLENSETEMSILESELRRVQEENHKLRIMLEQITKSYSQLQAQLFITLQKQKPNHGQACPHDHPAEDSSHSSKLEEPTQDLIPFKKARVSIRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAATAIAHTTSAAAAMLLSSSTSSTLRKESATGYLSNSFPYATMATSTLSASQPFPTITLDFTQNHNLSMHHNRVPLPLFFSHKLPPLLQLGQPPPSSMVESVSAAISSDPNFTTALAAAISSIIGPQRSGDGNNNLAGVVPGSPQLPQSCTTFSTN* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3540 406 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr7g3540 406 ProSiteProfiles WRKY domain profile. 183 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr7g3540 406 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 156 406 IPR044810 GO:0003700
Mtr7g3540 406 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 143 IPR044810 GO:0003700
Mtr7g3540 406 MobiDBLite consensus disorder prediction 144 165 - -
Mtr7g3540 406 MobiDBLite consensus disorder prediction 384 406 - -
Mtr7g3540 406 SUPERFAMILY WRKY DNA-binding domain 182 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr7g3540 406 MobiDBLite consensus disorder prediction 140 165 - -
Mtr7g3540 406 SMART WRKY_cls 188 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr7g3540 406 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr7g3540 406 Coils Coil 83 131 - -
Mtr7g3540 406 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 156 406 - -
Mtr7g3540 406 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 24 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3540 Mtr-Chr7 52388875 52392205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3540 1 406 WRKY Transcription Factor Family AT4G01720 40.655 1.59e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr7g3540 WRKY 2.7e-24 CL0274