Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3527 ATGATGGAAGATGGTAGTACATTCTCGTCGGCGAAGATATCCGTTTGGTGGGACATAGAAAACTGTCAAGTCCCACGATACTTCAACGACGCTAATTCCATCGCTCAAAATATCACCACCGCTCTCTTCAACTCCAACTTCCATGGCCCACTTTCCATTTCCTCTTACGGTGACACCACTCGCATCCCCTCCCACGTTCAACACGCGCTTTCTTCCACCGGCATTTCCCTCCATCACGTCCCCGCCGGGGCGAAAGATGCTAGTGATAAGAAGATACTTGTTGATATGTTGCTATGGGCTATTGATAACCCTGCACCTGCTAACTATTTGTTAATTTCTGGTGATAGAGATTTCTCAAACGCTCTTCATCAACTTCGTATGAGAAGGTATAACATTCTTCTTGCTCAACCTTTTTGTGCTTCTAAACCTCTTACCGCTGCGGCGAAAATCGTTTGGCAATGGCCTACACTCATTGCTGGTGGTCCTCCTTTCTTAACTGAACCAAACCCTAATTGTTCTAGGAAACTTTTCTATCAACCTAAACCTGAGACTGATCATAACAACAACAATAATGATACTAGTTCTGTTGCTAATTCTGAACAAGTTAAGACTTCAAAGTTGTTTAGATTAGCCCCACATGAATTCTTTTCTAGTAATCACCCTACAATAATCCCAATTAGTAGTACTAATCTCCAAACTCACAATCAGGACTCAACTAAAAGCATTACTGATTTTAATGTTCATAATAATCAATTAATGCTTCCACTTTCTCATGGTAATGATGATGCAACCCATGTTGGAAATGCTAGTTCTGAACAATTGTTGGGTTCTAATGTAAGGAAAGTGAAGAGTATGCCAACAATATCAACTTATGAGAATTTGCAAGGACTTGTGGATGTTATTCTAGTCACTTTGAATACACTGATGAATGAAATGGTTTTTCCTACTGAAGGAAATATAATTCATTGCATTCGTTATGGTGATCCCAAATATGAGACACTTGATATTAGGAAAGGTTTGCATTGTGCAATTGAGCAACAGAAGGTGGTTAAACGAGTATTTGGCACATTGCGTTTGTATATTGTTGCAAATGAGAATCTATGGAAGTGTGTCAACCCTTTACGTGGTTTGCCCAGTCATTTCCCAGATGCAATCTGGGTTAGGATTGAGAAATTTCTTGCTTCATCTTCAGGAAGATCAGCGATTTTGGCGTCTTGTAACAGATATGAAGCTTCATTAATTCTAAAGAAATTGTGTCTTGAAGAGCTTGTGTTGGGTGATGTACTTAAGATTTTGGAGATTATAATCACAATCAAGAAATGGATTATACCTTATCATTCTAGATGGCAGCCGATTACCATTTCACTTACAGAGACTAATGATGATAGTTGA 1392 0.3915 MMEDGSTFSSAKISVWWDIENCQVPRYFNDANSIAQNITTALFNSNFHGPLSISSYGDTTRIPSHVQHALSSTGISLHHVPAGAKDASDKKILVDMLLWAIDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPFCASKPLTAAAKIVWQWPTLIAGGPPFLTEPNPNCSRKLFYQPKPETDHNNNNNDTSSVANSEQVKTSKLFRLAPHEFFSSNHPTIIPISSTNLQTHNQDSTKSITDFNVHNNQLMLPLSHGNDDATHVGNASSEQLLGSNVRKVKSMPTISTYENLQGLVDVILVTLNTLMNEMVFPTEGNIIHCIRYGDPKYETLDIRKGLHCAIEQQKVVKRVFGTLRLYIVANENLWKCVNPLRGLPSHFPDAIWVRIEKFLASSSGRSAILASCNRYEASLILKKLCLEELVLGDVLKILEIIITIKKWIIPYHSRWQPITISLTETNDDS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3527 463 MobiDBLite consensus disorder prediction 178 199 - -
Mtr7g3527 463 CDD PIN_limkain_b1_N_like 12 137 - -
Mtr7g3527 463 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 7 448 - -
Mtr7g3527 463 Pfam NYN domain 12 148 IPR021139 GO:0004540
Mtr7g3527 463 Pfam OST-HTH Associated domain 408 461 IPR025677 -
Mtr7g3527 463 Gene3D - 9 155 - -
Mtr7g3527 463 MobiDBLite consensus disorder prediction 182 199 - -
Mtr7g3527 463 PANTHER LIMKAIN B LKAP 7 448 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3527 Mtr-Chr7 52268318 52270261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3527 8 166 C2H2 Transcription Factor Family AT5G61190 70.440 8.18e-70 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3527 - K17573 mtr:MTR_7g110390 924.465