Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3517 ATGGCTCCTATCATCACTCCGGTATCCTCAATTGTTGCTGGAAAAATTAACATCAAGCTTCGTGTGCGTGTTATCAACCTTTGGACGGTTCCAGATTTTTCAAGGCCAACTGAGGACAACTTCATTCATTTGCTTCTAATGGATGAAAAGCTTGGAAAGATTCAAGCAACCGCCAAGAAAACCCTCATTCCTAAGATACGATCATTGGTTCAAGATGGGGCAGCATATGAGATTCAGAATGTGTTGGTTGCTCACAATGAGATTAGGTATAGATGCACTGGCCACAGGTGGAAATTGAATCTGATAGATCAAACAAAATTCACAAAGATTGATTGCAACACAATACCTGAGTACCATTTTGAATTTGTGCCTTTCAAGGAGATACTTGAATCAACCAAGGAAGACAGACATGTTGATGTCATAGGACGTGTGGTGGAGAGAGATTCCTTGAAGGAGAAGGAAGTTCTTGGAAAAAAATCGATGGTACTTGACATAACTTTGGAGGATACTGAGGGCAATAGGATCCACTGTTCTTTGTGGGACACCTACGCTATTAGGATGGATGCATATCTCACCGTCCATGATCCGAATTCTCCAGTCATTGTTGTAATCCATTTATGCAAGCTTAAAAAATATTATGCCACAATGGGTATTTCAAATGCTTTTTATGGAACGAAACTAATTTTGGATGATGATCATCCTGTTGTTAAAGAATTTCTTTCTAAGATTGATGGTGCTGATGTTGAGGTTACACAGGGTGTAAGCCAAATTACCGGATCATTGATTGTTCCATTAGCTGAAGATATGCTTCAGTCAAGAATGATGACTATCGAGGACTTAATCGAGTCGTCTGACGTATAA 861 0.3961 MAPIITPVSSIVAGKINIKLRVRVINLWTVPDFSRPTEDNFIHLLLMDEKLGKIQATAKKTLIPKIRSLVQDGAAYEIQNVLVAHNEIRYRCTGHRWKLNLIDQTKFTKIDCNTIPEYHFEFVPFKEILESTKEDRHVDVIGRVVERDSLKEKEVLGKKSMVLDITLEDTEGNRIHCSLWDTYAIRMDAYLTVHDPNSPVIVVIHLCKLKKYYATMGISNAFYGTKLILDDDHPVVKEFLSKIDGADVEVTQGVSQITGSLIVPLAEDMLQSRMMTIEDLIESSDV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3517 286 PANTHER REPLICATION FACTOR A 1, RFA1 14 245 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr7g3517 286 CDD RPA1_DBD_A_like 19 107 - -
Mtr7g3517 286 Pfam Domain of unknown function DUF223 44 132 IPR003871 -
Mtr7g3517 286 Gene3D - 114 251 IPR012340 -
Mtr7g3517 286 SUPERFAMILY Nucleic acid-binding proteins 119 244 IPR012340 -
Mtr7g3517 286 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 14 245 - -
Mtr7g3517 286 CDD RPA1_DBD_B_like 139 239 - -
Mtr7g3517 286 Gene3D - 4 111 IPR012340 -
Mtr7g3517 286 SUPERFAMILY Nucleic acid-binding proteins 5 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3517 Mtr-Chr7 52142768 52144019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3517 1 249 Core DNA Replication Machinery Family AT5G61000 24.231 4.32e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3517 - - mtr:MTR_3g452170 554.673