Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3500 ATGCTGGATATTCATCAAGAACAAAGGGTCAATTTCACCGGAGACCCAACAAACTCTCAATTCCCCCACGACTTCGTCAATGTCAGCGGCAATGGTAACATAGCCGCCGTTGATTCTGGATTTCCTCCTCCTCCCCGACCGCCCCCTAATCATAATTATCCCATCCCTCGCAAACGACAATGGGGACCTCCTCAAGATCAAGTCGATGTTACGGGTCATGTTAAAGTTTACGTTGCACCTGTTCCCAGAACTGCATCTGAGGCTGATGTCCGCCTTGTGTTCCAAGGATATGGAACTATTGTCGAGGTTGTTCTTTTAAGGGATAAGGCAACTGGAGTTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTTGATGAAGCGGATATGGCTATTAAGGCTTTAAGCAATCAGTATACATTTCCTGGAGAATCATCACCTGTTGTTGTCAGATTTGCCGATCGAAAACGTGAACGTTTTGGGCTTCGAGACTTCTGTCAAAACATGGAAAGGAGAGATCCTCCCGAAGTGGTGGGTAAAGTTTATGTTGGTTGCATCAACAATGAAGCTTCAAAACAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATATAGAAGATGTCGTCGTCTTGCGGAATCGCGGATATGGTTTTGTCAAATTTTATAACAGAGAGATGGCGTTGGCAGCAATCAAAGGGTTGGATAGAACATTCACGATGAGAGGTTGTGATCAACCATTAATTGTTCGTTTTGCGGAACCGAAGAAACCTAGGATGGGAGAATTAAGGGGCAATTACTTACCTGCGAATGCAAGTTATGGTCCCAGTTCCCAAGAACCAGCAGCTTGGCCACTACCAAATTTTTGTGATCCCAATACTGGAGGAAGTAATATGCATATTGCTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATTCCCAACTGGCAACCTGTTGCTACTGTTGTACAGCAACAATTTCCACCCCAACACGTACATTCACAATTGACTTCGATGCCTTTACGGCCACTTCAAGCTCCCAACTTGTCTTCTCAACCATTTATCACTGAGGTGCAGAGACAATTTCATCCACCAGATTCATTGGTCCAAAATATAGAGCAGCAGCTAAGTTCTCAGCTACCTACTCAGACTGAACGTTGCAATACAGTTGTTGGTAGTACCTCACCTGATCTGCATACAAATCCCCAAGATGAAGAATTTCCAGAGTCTGACTGGAGCGAACATTACTGCCCTGATGGTAACAAGTACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCTGGGGAGTATGCTTTGTATGACAAAGAATCACAGAAGCAACACGAGCAAGATGATCATAGCTTACTTCAACCGCAATTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAAGCAACAGGAAACAAATCATGATGATCACATGCAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1497 0.4382 MLDIHQEQRVNFTGDPTNSQFPHDFVNVSGNGNIAAVDSGFPPPPRPPPNHNYPIPRKRQWGPPQDQVDVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLIVRFAEPKKPRMGELRGNYLPANASYGPSSQEPAAWPLPNFCDPNTGGSNMHIAPHHSRLPHQQVNAHIPNWQPVATVVQQQFPPQHVHSQLTSMPLRPLQAPNLSSQPFITEVQRQFHPPDSLVQNIEQQLSSQLPTQTERCNTVVGSTSPDLHTNPQDEEFPESDWSEHYCPDGNKYYYNCVTCESRWEKPGEYALYDKESQKQHEQDDHSLLQPQLSLSSSQEVSQKQQETNHDDHMQSETSPVVEQV* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3500 498 MobiDBLite consensus disorder prediction 460 477 - -
Mtr7g3500 498 Pfam WW domain 413 440 IPR001202 GO:0005515
Mtr7g3500 498 MobiDBLite consensus disorder prediction 382 415 - -
Mtr7g3500 498 ProSitePatterns WW/rsp5/WWP domain signature. 415 440 IPR001202 GO:0005515
Mtr7g3500 498 SUPERFAMILY RNA-binding domain, RBD 39 162 IPR035979 GO:0003676
Mtr7g3500 498 SUPERFAMILY WW domain 414 445 IPR036020 GO:0005515
Mtr7g3500 498 MobiDBLite consensus disorder prediction 40 64 - -
Mtr7g3500 498 MobiDBLite consensus disorder prediction 448 498 - -
Mtr7g3500 498 MobiDBLite consensus disorder prediction 40 54 - -
Mtr7g3500 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 143 IPR000504 GO:0003723
Mtr7g3500 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 238 IPR000504 GO:0003723
Mtr7g3500 498 PANTHER RNA BINDING PROTEIN 65 474 - -
Mtr7g3500 498 CDD WW 413 440 IPR001202 GO:0005515
Mtr7g3500 498 Gene3D - 65 160 IPR012677 -
Mtr7g3500 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Mtr7g3500 498 SMART rrm1_1 180 250 IPR000504 GO:0003723
Mtr7g3500 498 SMART rrm1_1 75 151 IPR000504 GO:0003723
Mtr7g3500 498 Gene3D - 400 461 - -
Mtr7g3500 498 SUPERFAMILY RNA-binding domain, RBD 178 268 IPR035979 GO:0003676
Mtr7g3500 498 Gene3D - 168 260 IPR012677 -
Mtr7g3500 498 MobiDBLite consensus disorder prediction 382 404 - -
Mtr7g3500 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 155 IPR000504 GO:0003723
Mtr7g3500 498 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 65 474 - -
Mtr7g3500 498 SMART ww_5 410 442 IPR001202 GO:0005515
Mtr7g3500 498 ProSiteProfiles WW/rsp5/WWP domain profile. 412 442 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3500 Mtr-Chr7 51993381 52001109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3500 58 367 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 9.18e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3500 K13207 - gmx:100776162 608.216