Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3494 ATGTCGAAGAGAAAGTTCGGATTCGAAGGTTTCGGCATAAACCGTCAATCAACCTACAGTTTCGAACGATCTCAACCTCCTCAACGTCTCTACGTTCCTCCTTCATCTCGTAAAAGCCACGACAATTTCGAAGACAACGACCTTGATAACATCGAGTACGATGATGATTCCAGAGAAGAACAATCAAACAATGATGATAACGCCGGTGGTGGTGGTGGTGGTGAAGAGGACGAAATCGATCCATTAGATGCATTCATGGAAGGAATACACGAGGAGATGAAATCGGCGCCGCCCCCGAAGCCGAAGGAGAAGGTGGAAGATAGATATAAAGATGATTTAGAGGATGATCCAATGGAGAGTTTTTTGAGGGCGAAGAAGGATTTAGGGTTGACGTTGGCGTCGGATGCGTTGCATGCTGGATATGATTCTGATGAGGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTGATTGATTATGATTCTGATGATAATCCTATTGTTCTTGATAAGAAGAAAATTGAACCTATTGCTCCTCTTGATCATAATGAAATTGATTATGAACCGTTTAATAAGGATTTTTATGAGGAGTCACCTTCAATATCAGGTATGAGTGAGCAAGATGTAATTGATTACAGGAAGAGTTTGGCTATTCGGGTATCAGGTTTTGAAGTTCCTAAGCCAGTAAAAACATTTGAGGACTGTGGGTTTGCTCCACAAATTATGGGTGCTATAAAGAAACAAGGTTATGAGAAGCCGACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGCATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATCGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATAGGAGTCATATGTGCACCTACCAGAGAATTGGCACATCAGATATATCTTGAGGCCAAGAAATTTGCTAAAGCATATGGAATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCCACGCCTGGAAGATTGATAGACATGCTAAAAATGAAGGCGTTGGCAATGCTCAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTTGATCTTGGATTTGAGCCGCAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGCCAAACCTTGCTCTTCTCTGCAACAATGCCTCGCAAAGTCGAAAAGTTAGCCAGGGAAATCCTTTCCGATCCTATCAGAGTGACAGTGGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCTGATTCTGAGAAATTGCCGTGGCTTCTGGAGAAATTGCACGAAATGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAAGTACAATTGGGTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAATCTTCTCGTATGGATATTTTACAGAAATTTAAATCTGGCGCCTACCATGTACTTATTGCAACTGATGTTGCCGCTCGTGGTCTTGACATTAAGTCAATTAAAACCGTGGTTAACTTTGATATTGCTAAAGATATGGACATGCATGTTCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGACGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCGGGTCAGAATGTGTCCACAGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCTAGAAAAGGAGGCGGGAGAAAAGGCAAAGGCAGAGGTGGGGGTGCAGGTGGCAAAGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAGTACAGATTCAAACAATGCACCGTCTAACGCAGTTCCAGGTCGGTCTGCCGCTGTAAATTCTCTGCGAACAGGAATGATGTCCCAATTTAGGAGTAGCTTTGTTGCTGCATCATCAACCTCCCAAAATGAAGGATTCAGTAATAATACAAGCATGGCTGTTAATAAGAGACCAACACTTGCTGGCTTTGTATCTGGTGGATCAATTGGCGGCGATATAAATACTCATCAGCAAACTGCTTCATACAATCCTGCTCCTTCAGCTGTAAATTCGACTAGTCAAAGTTCTGGAGTAAATCCTGGTCAGAACAACACAAACAGTTCTAAACCTAGAGAAAGGCGAAGGCCATCAGGTTGGGATAGATAG 2328 0.4326 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRKSHDNFEDNDLDNIEYDDDSREEQSNNDDNAGGGGGGEEDEIDPLDAFMEGIHEEMKSAPPPKPKEKVEDRYKDDLEDDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHNEIDYEPFNKDFYEESPSISGMSEQDVIDYRKSLAIRVSGFEVPKPVKTFEDCGFAPQIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALAMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLHEMIDQGDTLVFASKKATVDEIEVQLGQRGFKVAALHGDKDQSSRMDILQKFKSGAYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSTDSNNAPSNAVPGRSAAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNNTSMAVNKRPTLAGFVSGGSIGGDINTHQQTASYNPAPSAVNSTSQSSGVNPGQNNTNSSKPRERRRPSGWDR* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3494 775 SMART helicmild6 490 571 IPR001650 -
Mtr7g3494 775 MobiDBLite consensus disorder prediction 13 32 - -
Mtr7g3494 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 611 IPR027417 -
Mtr7g3494 775 MobiDBLite consensus disorder prediction 725 761 - -
Mtr7g3494 775 Gene3D - 439 615 IPR027417 -
Mtr7g3494 775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 462 611 IPR001650 -
Mtr7g3494 775 Pfam Helicase conserved C-terminal domain 464 571 IPR001650 -
Mtr7g3494 775 MobiDBLite consensus disorder prediction 616 642 - -
Mtr7g3494 775 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 659 - -
Mtr7g3494 775 CDD SF2_C_DEAD 449 581 - -
Mtr7g3494 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 440 IPR027417 -
Mtr7g3494 775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 262 437 IPR014001 -
Mtr7g3494 775 MobiDBLite consensus disorder prediction 1 105 - -
Mtr7g3494 775 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 659 - -
Mtr7g3494 775 MobiDBLite consensus disorder prediction 47 61 - -
Mtr7g3494 775 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 383 391 IPR000629 -
Mtr7g3494 775 Pfam DEAD/DEAH box helicase 255 426 IPR011545 GO:0003676|GO:0005524
Mtr7g3494 775 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 231 259 IPR014014 GO:0003724
Mtr7g3494 775 MobiDBLite consensus disorder prediction 725 775 - -
Mtr7g3494 775 MobiDBLite consensus disorder prediction 83 105 - -
Mtr7g3494 775 CDD DEADc_DDX42 242 438 - -
Mtr7g3494 775 SMART ultradead3 250 452 IPR014001 -
Mtr7g3494 775 Gene3D - 194 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3494 Mtr-Chr7 51924847 51929848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3494 231 587 Eukaryotic Initiation Factors Gene Family AT3G13920 35.294 1.07e-62 214