Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3478 ATGGAAGAAGTTGTGTTACTAATCGATGATTTAAGGTTACTTTCTGGAATTTCTCGCTGTAGAATTTGCCATGAAGAAGAGTTTGAAAGCTCCAAAGCCTTAGAAGCACCTTGTTCTTGTTCTGGAACTGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATACAGCTCCTCCTCCAAAGAAATCAGAGATAAATGATGAAGCAATGTCCATAAGGGGGGAGCAAGAAGCTTCAAACGCGATAAGAGAAAGTGAGGTGGAAGGAATTGTAATAGAAAGTGATTACTCGGAATGCAGCTCTACCACTAACAGAACCGCGTTTCACTGTCGATCATTGGCAATAGCTTTTACACTAGTGTTACTAGTAAGACATTGTTTGGTAGTGCCCACAAGTGGAACCGAAGATTATCCATTTACACTTCTTACCGTCATTGTTCTAAAGGCTTGTGGAATTATTATACCCATGTACATAGTTACTAAGACAATCGGAGCCATTCTGAATAGCATTAGGCGCTATCAAGGTTCTGACTACGACACATCTCTCTCTGAAGATGGCAGAAATGAAGAGCAGGACGAAGAAAATCTAATACATTCATAG 660 0.3985 MEEVVLLIDDLRLLSGISRCRICHEEEFESSKALEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSEINDEAMSIRGEQEASNAIRESEVEGIVIESDYSECSSTTNRTAFHCRSLAIAFTLVLLVRHCLVVPTSGTEDYPFTLLTVIVLKACGIIIPMYIVTKTIGAILNSIRRYQGSDYDTSLSEDGRNEEQDEENLIHS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3478 219 SMART ringv_2 19 68 IPR011016 GO:0008270
Mtr7g3478 219 Pfam Protein of unknown function (DUF3675) 73 183 IPR022143 -
Mtr7g3478 219 SUPERFAMILY RING/U-box 19 72 - -
Mtr7g3478 219 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Mtr7g3478 219 CDD RING_CH-C4HC3_MARCH 20 67 - -
Mtr7g3478 219 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Mtr7g3478 219 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 211 IPR033275 -
Mtr7g3478 219 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 211 - -
Mtr7g3478 219 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Mtr7g3478 219 MobiDBLite consensus disorder prediction 198 219 - -
Mtr7g3478 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3478 Mtr-Chr7 51764470 51767076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3478 20 67 C3H Transcription Factor Family AT2G37950 46.939 1.68e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3478 - - mtr:MTR_7g109460 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3478 7 51764470 51767076 Mtr1g3156 1 42838146 42840547 PCT