LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr7g3465	ATGCTACACGGATCGGTCATTGTATCACAAAAATCGAACCGGCATATAATTCTTCCATATTGGTTTCGCCGACTTTGGTTCTATGCAACTTTGCTTGTGTTTCTACCATTAATTGGCGGTCTTGCGCCTTTTGCTGCTCTTAGTCAATGGAACAACCATTTTTTGTTTAAGCTTTTTACTATGGAAGATTCTGAGGCCAAATCTACTGAAAACCAGCAGACTGAACAAGTGTGTAGTTTCTTTAGAAAACCTGTTAATAGGAAGAATATGAGGAAGCGAACTATTGAGAATGAAGATAATGAAAATGACTCAAACAACGAAGAGTCTTTGATGCATGTTCAGAAAAAGAACACGAAGGCTGACAATAAGTTGTTCTTTTCCACCGGTTCTTCGAAGAGCTCTGCATCTGCTAAACCGAATGAAGAATCTGAGAAACCTAGCTTTCATTTCGAGTCTTCTAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTTTGGAGACTGAGACTGATTTTTCAAGAGATGCCCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCGACAGAGAGTCTCAAGGGAAAGAGTACCAGTTCCGAGGATGTAAAATTATACAAGGGAATCAATAATTATACAGATCATAAGGCTGGATTTCGTAGAGAGCAAACAATTGCCAGTGAAAAGGCTGGTGGGTCACACGGTCCTCTCAGGGCTTCAGCTCACATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGATATATGCAAGGATTATAAGGAAACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGTGATTACAAATCTGGGTGGCAGATGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTACAGGTGAGGATGCGGAAGAGGAAGGCGCTAGTTTGAATGATGAAGATGATGATGAAGACGCATTACCATTTGCGTGTTTCATTTGTAGAAACCCATTTGTGGATCCTGTCTCAACCAAGTGTAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAATCAGCCTACGCTTGGCATTTTTAATGTGGCTCATGAGATACGAAAGAAGATGGCTGAGGATAAATAG	1164	0.4098	MLHGSVIVSQKSNRHIILPYWFRRLWFYATLLVFLPLIGGLAPFAALSQWNNHFLFKLFTMEDSEAKSTENQQTEQVCSFFRKPVNRKNMRKRTIENEDNENDSNNEESLMHVQKKNTKADNKLFFSTGSSKSSASAKPNEESEKPSFHFESSKEIQVQHDSKATATLETETDFSRDARAIRERALKQATESLKGKSTSSEDVKLYKGINNYTDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARKMRLATGEDAEEEGASLNDEDDDEDALPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK*	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr7g3465	387	CDD	RING-HC_RNF113A_B	326	366	-	-
	Mtr7g3465	387	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	326	385	IPR013083	-
	Mtr7g3465	387	SUPERFAMILY	CCCH zinc finger	249	281	IPR036855	GO:0046872
	Mtr7g3465	387	ProSiteProfiles	Zinc finger C3H1-type profile.	250	278	IPR000571	GO:0046872
	Mtr7g3465	387	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE	68	386	-	-
	Mtr7g3465	387	SUPERFAMILY	RING/U-box	327	370	-	-
	Mtr7g3465	387	MobiDBLite	consensus disorder prediction	138	158	-	-
	Mtr7g3465	387	ProSitePatterns	Zinc finger RING-type signature.	343	352	IPR017907	-
	Mtr7g3465	387	Pfam	Zinc finger, C3HC4 type (RING finger)	327	369	-	-
	Mtr7g3465	387	SMART	c3hfinal6	250	277	IPR000571	GO:0046872
	Mtr7g3465	387	Gene3D	-	248	282	-	-
	Mtr7g3465	387	PANTHER	ZINC FINGER PROTEIN 183	68	386	IPR039971	-
	Mtr7g3465	387	MobiDBLite	consensus disorder prediction	120	137	-	-
	Mtr7g3465	387	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	251	276	IPR000571	GO:0046872
	Mtr7g3465	387	MobiDBLite	consensus disorder prediction	89	166	-	-
	Mtr7g3465	387	ProSiteProfiles	Zinc finger RING-type profile.	328	366	IPR001841	-
	Mtr7g3465	387	SMART	ring_2	328	365	IPR001841	-
	Mtr7g3465	387	MobiDBLite	consensus disorder prediction	90	119	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr7g3465	68	387	C2H2 Transcription Factor Family	AT1G01350	69.375	1.05e-162	458

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Mtr7g3465		zf-C3HC4_3	4.2e-08	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr7g3465	K13127		-	gmx:100787434	568.155