Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3456 ATGCAAATGGAATTTGTTGCGAAAGTCAATAGATGGGAGATGGGAACGCGACTGCGGAAATCATGTATAGATGAAAGTAGGAGTTCTTGTTTTCCATCTAGCCGGAGTGAGCAGACGACGCAAACAGCCGCTGCTCTCAAATTAAACCATCTTGACATACATGATGATGATGATGCAGGATCACAAGGAGCAGTTGTTAGCAAGAAGAAAAAGAGGGGCCAACAACGGGATGCTAGAAAAAATAAGAGTAGAAGAGGGCTCCCCCAAATTAGCATGAAAGTGTTGGAGAAGGTAGAAAGTAAGGGAAGAACAACTTTCAATGAGGTGGCAGATGAACTTGTGGCTGAACTTGCTGATCCAATGAATAGTGGTTTGTCCCCTAATAAGCAACAATATGATGAGAAAAATGTTCGTCGAAGGGCCTATGATGTTCTCAATGTTCTCATGGCAATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCCTAGTGCTATTGAGGAGCTAAAGATCGAACGTCTAGGGATCAGGAATAGAATTGAAAGCAAAGCATCCTATCTAAAGGAGCTTGAGGAACAATTTGTAGGTCTTAAGAACCTTATTCAACGAAATAAGCAATTATATAGATCAGGAAATCCTCCAAGCGTAGGTGTTTCTTTACCTTTTATTCTGGTTCAGGTACACCATCATCTAATTATCTACCTTTTTGCTACTTCTCCAGAAGAAAATGTTGTTCAATTTTGCCTTGGATCTTCAATTGTGTGGTAA 783 0.401 MQMEFVAKVNRWEMGTRLRKSCIDESRSSCFPSSRSEQTTQTAAALKLNHLDIHDDDDAGSQGAVVSKKKKRGQQRDARKNKSRRGLPQISMKVLEKVESKGRTTFNEVADELVAELADPMNSGLSPNKQQYDEKNVRRRAYDVLNVLMAMDIISKDKKEIQWKGLPPSAIEELKIERLGIRNRIESKASYLKELEEQFVGLKNLIQRNKQLYRSGNPPSVGVSLPFILVQVHHHLIIYLFATSPEENVVQFCLGSSIVW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3456 260 PANTHER TRANSCRIPTION FACTOR DP 28 235 - -
Mtr7g3456 260 SUPERFAMILY E2F-DP heterodimerization region 171 240 IPR037241 -
Mtr7g3456 260 Coils Coil 192 212 - -
Mtr7g3456 260 Pfam Transcription factor DP 171 238 IPR014889 -
Mtr7g3456 260 Gene3D Transcription factor DP 171 256 IPR038168 -
Mtr7g3456 260 SUPERFAMILY "Winged helix" DNA-binding domain 85 166 IPR036390 -
Mtr7g3456 260 SMART E2F_TDP_2 82 165 IPR003316 GO:0005667|GO:0006355
Mtr7g3456 260 Gene3D - 76 170 IPR036388 -
Mtr7g3456 260 PANTHER TRANSCRIPTION FACTOR DP 28 235 IPR015648 GO:0005667|GO:0051726
Mtr7g3456 260 SMART DP_2 169 259 IPR014889 -
Mtr7g3456 260 MobiDBLite consensus disorder prediction 54 90 - -
Mtr7g3456 260 Pfam E2F/DP family winged-helix DNA-binding domain 85 165 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3456 Mtr-Chr7 51580410 51584672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3456 51 240 E2F-DP Transcription Factor Family AT5G02470 40.206 1.23e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mtr7g3456 E2F_TDP 9.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3456 K04683 - zju:107414839 288.115