Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3454 ATGGTCTCCCTCAAATTGCAAAAGCGCCTCGCTTCCAGCGTTCTTAAGTGCGGTCGTGGCAAAGTTTGGCTTGATCCAAATGAAGTTAACGAAATCTCCATGGCTAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATAATCAGGAAACCCACCAAGATTCACTCCAGGTCCCGTGCTCGTAGAATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAGAGGAAGGGTACCAGAGAGGCAAGGCTTCCCACAAAGATCCTTTGGATGAGGAGAATGCGTGTTCTCAGACGTTTGCTCCGCAAGTACCGTGAGGCTAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTGTTTAAGAATAAGAGAGTTCTGATGGAGAGCATTCACAAGTCCAAAGCTGAGAAGGCTAGAGAAAAGACCTTGTCTGACCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCCGTGAGAGGAAGCATGCTAGGAGGGAGGAGCGTTTTGCTCAAGGTCCTGGAGGAGAGAAGCCAGCAGAAGCTCCTAGTGCTGCACCTGTTGCTGCAACAAAGCCAACCCAGACCCAACCGCAAAAGAAATCAAAGAAGGCCGCTGCAGTCTGA 660 0.4833 MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGGEKPAEAPSAAPVAATKPTQTQPQKKSKKAAAV* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3454 219 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mtr7g3454 219 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mtr7g3454 219 MobiDBLite consensus disorder prediction 144 219 - -
Mtr7g3454 219 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Mtr7g3454 219 MobiDBLite consensus disorder prediction 144 185 - -
Mtr7g3454 219 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mtr7g3454 219 MobiDBLite consensus disorder prediction 57 79 - -
Mtr7g3454 219 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Mtr7g3454 219 PANTHER 60S RIBOSOMAL PROTEIN L19 1 215 IPR039547 GO:0003723|GO:0003735|GO:0022625
Mtr7g3454 219 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Mtr7g3454 219 PANTHER RIBOSOMAL PROTEIN L19 1 215 - -
Mtr7g3454 219 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Mtr7g3454 219 MobiDBLite consensus disorder prediction 57 85 - -
Mtr7g3454 219 Gene3D - 57 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3454 Mtr-Chr7 51563850 51565694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3454 1 215 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 82.791 1.26e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3454 K02885 - ming:122085408 344.739