Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3429 ATGAGTAGACATTCGAGCAGAACCGTGTATGTTGGAAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCGCCAAGGCCCCCCGGCTACGCATTTGTTGAGTTTGAAGATGTTCAAGATGCCGAGGATGCAATTCGCGGTCGTGATGGTTATGATTTTGATGGGCACCGATTACGGGTGGAGGCTGCACATGGTGGTCGTGGCAATTCATCTTCAAGAGATCGATACAGCAGTCACAGCAATGGCCGAGGTGGACGCGGGGTATCCAGGCGCTCTGAATATCGTGTTATAGTCAATGGACTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCCGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACTACTGGGATTGTGGATTACACAAACTACGATGATATGAAATATGCTATCAAAAAGCTTGATGACTCTGAGTTCCGGAATGCTTTTTCCAAGTCTTACGTTCGTGTGAGGGAATATGATTCGAGGCGGGACTCTAGAAGTCCTGGTCGTGGGCCTTCTCATTCTAGAGGAAGAAGCTATAGCCGCAGTCGTAGTCGCAGCCGCAGCCATAGCCGTAGCTACAGTCCAGGCCATAGCAGAAGCAAATCTCCTAAGGGTAAATCCTCACAACGGTCACCAGCTAAATCTCCAGCAAAATCAGTTTCTCGCTCTCGCTCCAGATCTAGATCCCGTTCTTTATCAGGATCACGGTCAAGGTCTAGGTCTCCATTGCCTCTGCGTAATAAAAGCCCCAAAAAGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCCGTAGCAAGAGTTTGTCCAGGTGA 903 0.485 MSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPGRGPSHSRGRSYSRSRSRSRSHSRSYSPGHSRSKSPKGKSSQRSPAKSPAKSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKKRSASRSPSRSRSRSKSLSR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3429 300 SMART rrm1_1 112 183 IPR000504 GO:0003723
Mtr7g3429 300 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mtr7g3429 300 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 292 - -
Mtr7g3429 300 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Mtr7g3429 300 MobiDBLite consensus disorder prediction 224 249 - -
Mtr7g3429 300 MobiDBLite consensus disorder prediction 205 223 - -
Mtr7g3429 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Mtr7g3429 300 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 292 - -
Mtr7g3429 300 Gene3D - 110 188 IPR012677 -
Mtr7g3429 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mtr7g3429 300 MobiDBLite consensus disorder prediction 79 108 - -
Mtr7g3429 300 CDD RRM2_SF2_plant_like 111 186 - -
Mtr7g3429 300 Gene3D - 2 109 IPR012677 -
Mtr7g3429 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mtr7g3429 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Mtr7g3429 300 MobiDBLite consensus disorder prediction 87 102 - -
Mtr7g3429 300 CDD RRM1_SF2_plant_like 8 78 - -
Mtr7g3429 300 MobiDBLite consensus disorder prediction 185 300 - -
Mtr7g3429 300 MobiDBLite consensus disorder prediction 274 289 - -
Mtr7g3429 300 MobiDBLite consensus disorder prediction 185 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3429 Mtr-Chr7 51338152 51342821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3429 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.25e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3429 K12890 - gmx:100789847 350.132