Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3426 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGCAGAAGAAACTTCCTGAGGTTGGATTCAAGAAGCTCAAAAAAATCTTGAAGAAGTGTCGTAGAGATTCTTCTCAATCACAACCCTGCCCTGATCATTGCTCAGTGTGTGATGGGACCTTTTTCCCTTCACTTCTCAGTGAAATGTCTGAGATAGTAGGCTGCTTTAATCAGCGTGCACAGAAATTGCTTGAGCTACATCTTGCTTCTGGTTTCAGAAAGTACATTTTATGGTTCAAAGGTAAATATCATAAAAACCATACTGCTCTTATTCAAGAAGGTGAAGATCTCGTTACTTATGCACTCATAAATGCCACCGCAATCCGAAAAATACTAAAGAAGTATGATAAGGTTCATTATTCCAAGCAAGGGCAATTGTTTAAGTCACAAGTTCAGAGTATGCACAAGGAAATTCTTCAAAGTCCGTGGCTCTGTGAACTTATGGCATTCCACATCAATTTAAGAGAAACCAAGGTCAATTCAAGGAAGGAAACTGCTTTGTTTGATGAATGTTCTCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGATCTCTTTGATTCTATCAAAATTGACATTGACTTGACTTGTTCTATATGCTTGGACACTGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATATTCTGTTACATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTCGATGGACTTAAGGCAGCCAATCCTAAAGAAAAATGTCCTCTATGCAGAGAGCGTGCGGTTTATGAAGGTGCTGTGCATTTGGAAGAACTAAATATTCTATTAGGCCGAAGCTGTCAGGAATACTGGGAACAAAGACTTCAATCAGAGAGGGTAGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGAGCTTTCATGGGCGTCTAA 951 0.3975 MKFCKKYQEYMQGQEQKKLPEVGFKKLKKILKKCRRDSSQSQPCPDHCSVCDGTFFPSLLSEMSEIVGCFNQRAQKLLELHLASGFRKYILWFKGKYHKNHTALIQEGEDLVTYALINATAIRKILKKYDKVHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVNSRKETALFDECSLTFKDGKPSLTCDLFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAANPKEKCPLCRERAVYEGAVHLEELNILLGRSCQEYWEQRLQSERVERIKQIKEHWDSQCRAFMGV* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3426 316 SMART ring_2 212 260 IPR001841 -
Mtr7g3426 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 314 IPR013083 -
Mtr7g3426 316 Pfam Zinc finger, C3HC4 type (RING finger) 209 262 - -
Mtr7g3426 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 - -
Mtr7g3426 316 ProSiteProfiles Zinc finger RING-type profile. 212 261 IPR001841 -
Mtr7g3426 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 IPR033326 -
Mtr7g3426 316 SUPERFAMILY RING/U-box 205 264 - -
Mtr7g3426 316 CDD SPX_BAH1-like 2 139 - -
Mtr7g3426 316 ProSiteProfiles SPX domain profile. 1 143 IPR004331 -
Mtr7g3426 316 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3426 Mtr-Chr7 51316741 51320083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3426 209 261 C3H Transcription Factor Family AT4G28270 41.379 9.50e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3426 K16275 - gmx:100787904 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3221 1 43492570 43497349 Mtr7g3426 7 51316741 51320083 PCT