Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3406 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGAGAAGAAGTTAGTAAGCAGCAAGAGGTACAAAATAATCTCAATGACTCAAGTTCAGGTCCATCTGGTGCATGCAATAGCAATGGTTCCACTAATCAACAGCAAAATAAGAAGAAAAGAAACCTTCCTGGAACTCCAGATCCTACTGCTGAAGTGGTTGCATTATCTCCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGTAACAAGGGTTTTCAGAGGGACCAGAATCTTCAGTTACACCGAAGAGGTCACAATCTTCCATGGAAACTTAGGCAAAGAACAAGTGCAGAGGTGAAGAAAAAGGTGTATGTGTGCCCTGAGCCATCATGCGTTCACCATAATCCATCTCGAGCATTAGGTGACCTTACTGGAATCAAAAAACATTTTAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCTGTTCAATCAGATTGGAAGGCTCACCAGAAAACTTGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGACAGTTTTATAACCCACAGAGCATTCTGTGATGCATTAACTGAAGAAAACAACAGAGTAAACCAAGGATTAACTAGTGGCATGCCACCAAACTTGCAAAGCCAAATGCATGATCCTATTTCTACCATGCCTCTAAAACCTGTTTCCAACACTTCCTCAGAATTAAACAATGACTATGACCCTAAAAACTCACTAAGATCCCCATCTCAAGAACATGCTCCAACATCATTCAGATCAACCAACAATGCATGCGGTGGCATGTTCTCAACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAACCTTGCCTCCATCTTCTTCAACCCTTCAACTTAGTTCCAATTCCAACAGCTTCAATTACTTCAATGACAGTAAAAACGGAGGACTAATTGCTGGCATGGCTCAAATGTCGGCAACCGCTTTACTACAAAAAGCAGCACAAATGGGTGCTACTGCAAGCAATAGTGGGAACTCTTCCATGATGCAGAAAAGCTTTGTTGGTAGCATGGTTAGTCCTAATCATGTTTCTGGTTCCATCATGATGCATCATAACCAAAACCAACCCTCTTATGAACACTTTAATCCACTACAGCATGAATTATCTAACATGGCTGGTGTTAGTGGTGGAGGAGCATTTACTAACCAATTGTTTCAAAAAGAACAACAAGAAATTTCATTACTGTTTGATAACAATACTAATGTGTCTACAATGAATAATGATATTGGAATGTTTAGCCATCATGGATTGATGAAGAATGTTGGACAAGAGGTTAGTAACTGTTCAAATTTGATACATGGAAATGATGTGGCAACAGTTCATGATTTCTTGGGAATTGGTGGTTCAAGCTCAAGTTTGCATGAACCGCAGCAACAAAGATTGGAAGCATTGAGTCAACAGAGGTTGGAAATTATGAATAATTTTCATCATCATCTTCCACATGAGGATTCAGCAATGGAGAAATCAATTTGGGATGTTTGA 1566 0.3953 MSNISGDEGSFSSGNNGEEVSKQQEVQNNLNDSSSGPSGACNSNGSTNQQQNKKKRNLPGTPDPTAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKKVYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMHDPISTMPLKPVSNTSSELNNDYDPKNSLRSPSQEHAPTSFRSTNNACGGMFSTSAGALFGGPKTLPPSSSTLQLSSNSNSFNYFNDSKNGGLIAGMAQMSATALLQKAAQMGATASNSGNSSMMQKSFVGSMVSPNHVSGSIMMHHNQNQPSYEHFNPLQHELSNMAGVSGGGAFTNQLFQKEQQEISLLFDNNTNVSTMNNDIGMFSHHGLMKNVGQEVSNCSNLIHGNDVATVHDFLGIGGSSSSLHEPQQQRLEALSQQRLEIMNNFHHHLPHEDSAMEKSIWDV* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3406 521 MobiDBLite consensus disorder prediction 1 67 - -
Mtr7g3406 521 SUPERFAMILY beta-beta-alpha zinc fingers 81 179 IPR036236 -
Mtr7g3406 521 MobiDBLite consensus disorder prediction 1 58 - -
Mtr7g3406 521 MobiDBLite consensus disorder prediction 217 277 - -
Mtr7g3406 521 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Mtr7g3406 521 SMART c2h2final6 158 178 IPR013087 -
Mtr7g3406 521 SMART c2h2final6 82 104 IPR013087 -
Mtr7g3406 521 SMART c2h2final6 123 153 IPR013087 -
Mtr7g3406 521 Pfam Zinc finger, C2H2 type 82 104 IPR013087 -
Mtr7g3406 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Mtr7g3406 521 Gene3D Classic Zinc Finger 60 128 - -
Mtr7g3406 521 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 504 - -
Mtr7g3406 521 Gene3D Classic Zinc Finger 136 216 - -
Mtr7g3406 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3406 Mtr-Chr7 51165785 51169162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3406 32 349 IDZ Gene Family AT3G50700 54.598 8.13e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr7g3406 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3406 - - cam:101505978 830.476