Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3398 ATGTCAACGAAACACAACTTCATCTCTAATGTTTCGCCAAGAAAACAATCGTGGACATTGGTTGTGAGGGTTGTTCGTGCTTGGTTTGGTCAAGACTACAAAAATAAAAAACTACCATTTTTCATGGAGTTGGTTCTAATGAATCGAAAGGGTGATCGAATTGGTGCGTCTATACGAAGAACATTGATCTACAAGTTCAAGGAACAACTCCAAGAGGGAATGGTGTTCACGATTTCCTCATTTAATGTTGCTAGCAACAGTGGTTCGTATCGACCATCATGCAACGAATACAAACTGGATTTCACAATCAACACAAAAGTCAAACTATCTAAAACTGTTTTGGTCCCAACAAACGTGTATTCGTTTACACCTGCACCTCATGTTTTCAATGAATCTTACGACAACAACTACTTAGTTGATGTAATAGGAGTCATGATTGGAGTTGGAGTTGGAGTTGAAAGAGAGTACGAAAGAGATGGTACGTACCGTTTTAAATGTACTCTTTTTGGAGAGTATGTTGAAGAGCTGAACTCTTTCCTATCTTCCGGTGAATCTCAAAATGCTGTTGTAGCCATTATGTTGACAAAAGTTAAATTGTTTCAAGGAAAACCAGCATTGCGAAATGCATTTTCTTACACTAGAATCACATTCAATCCTGAAATGGGTGAAACAAAGGAAATAAGGAAAAGCTTTCTTAGTGCAAATACAAATTCTCCTGCATCGGGATTGATCCAGTTACCAAATTCATCTCGCATACCTGTAAATGAGGAGTTTCTCTTACTTACTCCTAGGACCACTATTGAGGAGTTGAAGAATGTTAATAAGAGATCATTGTGA 837 0.3775 MSTKHNFISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFFMELVLMNRKGDRIGASIRRTLIYKFKEQLQEGMVFTISSFNVASNSGSYRPSCNEYKLDFTINTKVKLSKTVLVPTNVYSFTPAPHVFNESYDNNYLVDVIGVMIGVGVGVEREYERDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALRNAFSYTRITFNPEMGETKEIRKSFLSANTNSPASGLIQLPNSSRIPVNEEFLLLTPRTTIEELKNVNKRSL* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3398 278 SUPERFAMILY Nucleic acid-binding proteins 122 231 IPR012340 -
Mtr7g3398 278 CDD RPA1_DBD_B_like 158 231 - -
Mtr7g3398 278 CDD RPA1_DBD_A_like 19 107 - -
Mtr7g3398 278 Gene3D - 115 240 IPR012340 -
Mtr7g3398 278 SUPERFAMILY Nucleic acid-binding proteins 7 110 IPR012340 -
Mtr7g3398 278 PANTHER REPLICATION FACTOR A 1, RFA1 20 273 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr7g3398 278 Gene3D - 5 109 IPR012340 -
Mtr7g3398 278 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 273 - -
Mtr7g3398 278 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3398 Mtr-Chr7 51059758 51061739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3398 5 228 Core DNA Replication Machinery Family AT5G08020 25.000 7.82e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3398 - - mtr:MTR_8g088810 462.611