Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3390 ATGGGTGGTTCTCCTAGAAACCCTAACCCTAACCCTTCACACAAACTAGTTCGACCCTGTGATTATTGTGGCCATTCAAACGCAGTTATATACTGCAGAGCAGATTCAGCCAAACTCTGTTTCTCTTGTGATCGTGAAGTTCACTCCACAAATCAACTCTTCTCAAAGCACACACGCTCCTTAATCTGTGATTCATGCGATGATTCACCTGCTACTATACTCTGTTCTACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAATCACAACCTTTCACTATCTTCACCTCATGAACGAAGGTCTCTTGAGGGTTTTACAGGGTGCCCTTCTGTTACTGAGCTTTTGTCGATTCTGGGTTTGCAGGATATTGGAAAAAAATCGTTGCTTTTGCCTCAGGAAAGTGTAGGAGATGGGTTTGTTGGGTATGAGATTGAAGGGCTTTCTGATATGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGATGATCTTATTTCTTCTTCTCCTTCTTCTCATAACTATCGTGCTATGGAGGTTCCTCCTTTGCCTAAGAATCGTAAGGCTGCTTGTGGTAGACACAGAGAAGAGATTTTAAATCAGCTTCGTGAGATGACAAAGTCTGAGCCCTATGATCCTGAAGAGTATATACCACCGGCAAATTTATCTACAAGTTTTGATTGTGATGTAAAGGCTGATATTGTTCCTTCAAATGAGTGGCTCAGAGAAAGTAGCGAGCCTATGTATCAAGTTGTTCCTGTTGATACATCATTCAAAGCTCACACCGAAGAAATTTCAGTTAAACATTCTGTATCTTCTGTTGGGGAGCCTCATACCCATTGTAACAACGGAGGGACGCCTTCAGAACCTCTCAACCATTGTAACAACGGAGGGACGCCTTCAGAGTATGTCAAGTCTGAAACCTTGTCAACTACTTCTAAAGCTGTTCCTCCTCCATATGAGTTAGCAAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAAAAGAAGAAAACAAGAAGATATGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCGGAGAGCAGGACAAGAGTTAAGGGCCGATTTGCCAAGATAGACCACTGA 1119 0.4209 MGGSPRNPNPNPSHKLVRPCDYCGHSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRSLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGFVGYEIEGLSDMFVWDAPSFVSLDDLISSSPSSHNYRAMEVPPLPKNRKAACGRHREEILNQLREMTKSEPYDPEEYIPPANLSTSFDCDVKADIVPSNEWLRESSEPMYQVVPVDTSFKAHTEEISVKHSVSSVGEPHTHCNNGGTPSEPLNHCNNGGTPSEYVKSETLSTTSKAVPPPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKIDH* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3390 372 MobiDBLite consensus disorder prediction 270 320 - -
Mtr7g3390 372 ProSiteProfiles Zinc finger B-box type profile. 58 104 IPR000315 GO:0008270
Mtr7g3390 372 CDD Bbox1_BBX-like 19 62 - -
Mtr7g3390 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 372 - -
Mtr7g3390 372 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Mtr7g3390 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 17 372 - -
Mtr7g3390 372 ProSiteProfiles CCT domain profile. 328 370 IPR010402 GO:0005515
Mtr7g3390 372 MobiDBLite consensus disorder prediction 270 319 - -
Mtr7g3390 372 CDD Bbox1_BBX-like 62 104 - -
Mtr7g3390 372 Pfam CCT motif 328 369 IPR010402 GO:0005515
Mtr7g3390 372 SMART bboxneu5 15 62 IPR000315 GO:0008270
Mtr7g3390 372 SMART bboxneu5 63 104 IPR000315 GO:0008270
Mtr7g3390 372 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Mtr7g3390 372 Pfam B-box zinc finger 61 103 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3390 Mtr-Chr7 50995296 50998720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3390 14 343 C2C2-CO-like Transcription Factor Family AT2G47890 40.774 6.02e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr7g3390 CCT 1.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3390 - - mtr:MTR_7g108150 762.296