Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3377 ATGGCGGAAACAAAGGAAGAGAGTAAATCTAACAACGAAGAAAGTGTGAAATTGTTCGTAGGTCAAGTACCGAAACACATGACGGAAGATGAGTTACTTACATTGTTCAAAGAATTTGCTATAGTTGACGAAGTCAACATCATCAAAGACAAAGCTACACGCGCTTCTCGAGGTTGTTGTTTCGTGATTTGTCCTTCTAGAGATGAAGCTGATAAGGCCGTTAATGCGTGTCACAATAAGAAAACATTACCAGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACATTTCTGAAGTTGAAGTATCCGCACTTTTCTCCAAGTACGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAACAGACAAGCAAAGGTTGTGCATTTTTGAAGTATGAAACGAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCGTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAGTCTCAAGCTTCTAATGTGGGACATGATTCTCAGCATCCTTCATTATTTGGAGCCATGCCTATGGGTTATGTTCCTCCATATAACGGTTATGGTTATCAGGCTCCTGGAAGTTATGGGCTCATGCCGTACCGCATGCCACCACCAATGCAGAATCAACCTGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATGCATTGCGGCCAGATCTCGGCCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTGCCAGGGCTACAACATCCGATGGCATATCCTGGAGGAATGATAAGTCCAAGACCTTTGAATAGTCCTCCTGGTTCTGTTTCACCTTCCGGTGGAAATGGCAACTCCGCTACATCATCAGGGTCCAGCAAAAATTCTGGTGGTGGTCAAGCTGAAGGACCACCTGGCGCAAATCTGTTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCCTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGACAAAGCTACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAAGCTGCTCAATCTGCTATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCCGGTAAACCTTACTGA 1302 0.4255 MAETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3377 433 Gene3D - 102 193 IPR012677 -
Mtr7g3377 433 MobiDBLite consensus disorder prediction 303 347 - -
Mtr7g3377 433 Gene3D - 2 101 IPR012677 -
Mtr7g3377 433 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 420 - -
Mtr7g3377 433 MobiDBLite consensus disorder prediction 194 208 - -
Mtr7g3377 433 PANTHER RNA BINDING PROTEIN 9 420 - -
Mtr7g3377 433 CDD RRM1_2_CELF1-6_like 17 93 - -
Mtr7g3377 433 CDD RRM3_CELF1-6 350 422 - -
Mtr7g3377 433 SMART rrm1_1 17 93 IPR000504 GO:0003723
Mtr7g3377 433 SMART rrm1_1 105 180 IPR000504 GO:0003723
Mtr7g3377 433 SMART rrm1_1 349 422 IPR000504 GO:0003723
Mtr7g3377 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 426 IPR000504 GO:0003723
Mtr7g3377 433 Gene3D - 320 425 IPR012677 -
Mtr7g3377 433 MobiDBLite consensus disorder prediction 186 209 - -
Mtr7g3377 433 CDD RRM1_2_CELF1-6_like 105 180 - -
Mtr7g3377 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Mtr7g3377 433 MobiDBLite consensus disorder prediction 316 340 - -
Mtr7g3377 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Mtr7g3377 433 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Mtr7g3377 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Mtr7g3377 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Mtr7g3377 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Mtr7g3377 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Mtr7g3377 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Mtr7g3377 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 420 IPR000504 GO:0003723
Mtr7g3377 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 169 IPR000504 GO:0003723
Mtr7g3377 433 SUPERFAMILY RNA-binding domain, RBD 104 428 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3377 Mtr-Chr7 50902374 50907341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3377 333 431 Eukaryotic Initiation Factors Gene Family AT4G34110 34.615 3.38e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3377 K13207 - gmx:100813239 751.895