Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3370 ATGGCTGCCCCTCGTCAACTCTCTCAGAAAGAAGCTGATATCCAGATGATGCTTGCCGCCGATGTCCATCTCGGTACTAAAAACTGCGACTTTCAGATGGAAAGATACATCTTCAAGCGCCGCAACGATGGGATTTATATTATAAATCTCGGAAAAACATGGGAAAAGCTTCAACTCGCTGCTCGTGTTATTGTTGCAATTGAAAACCCACAAGATATCATTGTTCAATCTGCTAGACCTTATGGGCAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCCAATGCTATTGCTGGAAGACACACTCCTGGTACATTCACAAATCAGATGCAAGTTTCTTTCAGTGAGCCTAGGCTTCTTATCCTCACTGATCCAAGAACTGATCATCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCAACAATTGCTTTCTGTGATACTGATTCGCCTATGCGATATGTCGACATTGGAATCCCGGCCAACAACAAGGGAAAGCACAGTATAGGATGTCTGTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGAACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTTGACTTGTTCTTCTATAGAGAACCTGAGGAGGCGAAGGAGCAAGAGGAAGATGAAGTTCCTGCACCAGATTATGCCATTGCTGACTTTAATGCAGGTTCTATCCCCAATGATGGACAATGGCCTGCTGCTATCGATCAACCATGGAATGATGCAGTTCCAGAGCCTATTCCAGCAGTTCCTGCTGTCAACTGGGCAGCCCCAGAAGCTGCTGCAGGGGGGGATTGGGGTGAAGCTGTTCCAGCCCCACAACAAATACCTGCTCCTGGAGTTGAGTCCATCCAAGCAACTGGCTGGGAATAA 894 0.4676 MAAPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQVSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPAPDYAIADFNAGSIPNDGQWPAAIDQPWNDAVPEPIPAVPAVNWAAPEAAAGGDWGEAVPAPQQIPAPGVESIQATGWE* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3370 297 MobiDBLite consensus disorder prediction 265 297 - -
Mtr7g3370 297 PANTHER 40S RIBOSOMAL PROTEIN SA 1 287 IPR005707 GO:0003735|GO:0006412|GO:0015935
Mtr7g3370 297 ProSitePatterns Ribosomal protein S2 signature 2. 118 142 IPR018130 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 PANTHER 40S RIBOSOMAL PROTEIN SA 1 287 - -
Mtr7g3370 297 Gene3D - 13 218 - -
Mtr7g3370 297 SUPERFAMILY Ribosomal protein S2 9 199 IPR023591 -
Mtr7g3370 297 CDD RPS2 17 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 PRINTS Ribosomal protein S2 signature 14 32 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 PRINTS Ribosomal protein S2 signature 44 53 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 PRINTS Ribosomal protein S2 signature 93 110 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 PRINTS Ribosomal protein S2 signature 118 135 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 PRINTS Ribosomal protein S2 signature 135 146 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 PRINTS Ribosomal protein S2 signature 156 170 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 Pfam Ribosomal protein S2 17 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 Pfam Ribosomal protein S2 117 181 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr7g3370 297 Hamap 40S ribosomal protein SA [rps-0]. 1 265 IPR027498 GO:0003735|GO:0006412|GO:0015935
Mtr7g3370 297 TIGRFAM uS2_euk_arch: ribosomal protein uS2 9 205 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3370 Mtr-Chr7 50839442 50842174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3370 3 271 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 76.344 7.02e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3370 K02998 - gmx:548014 506.523