Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3344 ATGTTGAGTTTCAGAATGATGAACTTGTTGTCCCGTATCAAAACAAGAACAAAGAAGAAAATCAAAAGAAAAAATCCAAACCAAAACCCTCACAAACTCAAAAACCAAAACCCCATTTCTTCCATTACCAAAAACCACTCATCTCTCGTTGAAGAAGAAGAAGAAGAAGATACCAAAGAATGTTTCAGCATCAAAAGCTCTGCCCCATCACACACACACGGTGTTCAGCCCTTAGGCAATCTCTATTTCAATCCAGGTTCCATCAACTCCAGAGACACTGGTTTAGGTAATCTTCATACCCTCACTGATGAGCTTGTTCTTGATATTCTAGGGTTTTTGGATGGTAATAGTTTAGGGGTTTTGGCTTGTGTGAGCAAATCGTTTTATGTTTTTACTAATCATGAACCCCTTTGGAGGAATCTTGTGTTGGAGAATTTTGTTGATGGGTTTCAGTATAATGGGTCATGGAAATCTACTTTTGTTGTTTCTAAGGGGTACCCTTTGTTGCATATGGCGAGTGGTGATGTTCGGAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTTTTTCAGAGTTGGTTATGTGCTAATCTTGAAATGAAAGGTGAATGGTTGGAGAGGGATAATATTGTTAGGAAGAGAGGGATTTCGGTTGCGGAGTTTGTGGCGAATTTTGAGGAGGTTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGGAATTGGGATAGAGATTATTTGGTTAATTTGTGTGGTGATGATGTTAAGTTTTCGGTTGGGCCGGTGGAGATAAAGCTTAAGGACTATTTTGGGTATTCGGATCAAGTTAGAGAAGAAAGGCCGTTGTATTTGTTTGATCCAAAATTTGCTGAAAAAGTTCCGAAATTGGGTTTGGAATATGAAGTTCCGGTGTATTTTCGGGAGGATTTGTTTGGTGTTTTGGGAAATGAGAGACCTGATTATAGGTGGATTATTATTGGACCAGCTGGGTCTGGATCGTCTTTTCACGTTGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAGGGGTCGAAGAAATGGGTATTGTTTCCTCCCGATGTTATTCCGCCCGGTGTTCATCCTAGCCCTGATGGTGCAGAGGTTGCTTCACCTGTTTCAATAATTGAGTGGTTCATGAACTTTTATGGTGCAACAAAGAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCAATTGCCGTAACACAAAACTATGTTAGCAGGAGAAATTTGTCAAGTGTCTTGGAGTTTCTTAAGAGGCCGAACGCAAGCACACTGGTATCTGGAACAAAGGATAGAGTAAATTTGCATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGCAATTGATGAACTGGCCCAAAAAGAAGAAGAGAAAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTTGCAGACACCAGAGTGGGAGCTTTCAAGTTCTCTTTCTAG 1566 0.4017 MLSFRMMNLLSRIKTRTKKKIKRKNPNQNPHKLKNQNPISSITKNHSSLVEEEEEEDTKECFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLHTLTDELVLDILGFLDGNSLGVLACVSKSFYVFTNHEPLWRNLVLENFVDGFQYNGSWKSTFVVSKGYPLLHMASGDVRSFKVRDFYSDYLFQSWLCANLEMKGEWLERDNIVRKRGISVAEFVANFEEVNKPVLLEGCIDNWDALRNWDRDYLVNLCGDDVKFSVGPVEIKLKDYFGYSDQVREERPLYLFDPKFAEKVPKLGLEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECICKAGEVIFVPSGWWHLVINLEESIAVTQNYVSRRNLSSVLEFLKRPNASTLVSGTKDRVNLHDKFKNAIEASFPGAIDELAQKEEEKKIQQRKLSFWDSVADTRVGAFKFSF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3344 521 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 64 518 - -
Mtr7g3344 521 SUPERFAMILY F-box domain 93 161 IPR036047 GO:0005515
Mtr7g3344 521 MobiDBLite consensus disorder prediction 15 49 - -
Mtr7g3344 521 ProSiteProfiles JmjC domain profile. 296 456 IPR003347 -
Mtr7g3344 521 MobiDBLite consensus disorder prediction 30 46 - -
Mtr7g3344 521 SMART cupin_9 287 456 IPR003347 -
Mtr7g3344 521 MobiDBLite consensus disorder prediction 15 29 - -
Mtr7g3344 521 ProSiteProfiles F-box domain profile. 95 141 IPR001810 GO:0005515
Mtr7g3344 521 SMART fbox_2 101 141 IPR001810 GO:0005515
Mtr7g3344 521 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 64 518 - -
Mtr7g3344 521 Gene3D Cupin 191 441 - -
Mtr7g3344 521 Gene3D - 91 166 - -
Mtr7g3344 521 Pfam F-box-like 103 143 IPR001810 GO:0005515
Mtr7g3344 521 SUPERFAMILY Clavaminate synthase-like 216 454 - -
Mtr7g3344 521 Pfam Cupin-like domain 220 439 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3344 Mtr-Chr7 50593264 50600603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3344 86 448 Glycosyltransferase AT1G78280 39.247 5.90e-79 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr7g3344 Cupin_8 7.1e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3344 - - mtr:MTR_7g106990 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3344 7 50593264 50600603 Mtr7g3344 7 50593264 50600603 ECH