Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3320 ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCGAAGAAAGGCGGTTTATAAGAGAAGATTGAAAGGGTTGTTCACCAAAATGAAGCATGTGACAATCTTATGTGGCATTGAGGCATGTGCAGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTACAGTAGCTGAAGACCTAATAACCAAGTTTGAGTCAATGTCATTGGATGTGCAATCGAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGAAAAGATCAACAAAGAAAATGAAGAGACTTTAATGGGAGCTTATCTACATCAAATTGAAAACGAAGGTAAGTCTTTAAATGATTTTGATCATGATGTGCAGAATCGCTTGATTGCTTTTACTCTTGAAAAAATTAAGATTACTAGAAAGATGTCTAGGCATTTAGAAAAAGAGATATTACCTCTTAATAATCCTCCTCCACCGTTAGCACCAATATCTTTTACTTTAGACAATGGTGATGGGGTTAACATGTATGGACATGTTTCGAACCAACAACCCTTGTCAGATTTGGTCAAGAAAGTTGATCAAATGAGCAGTGGTTTCAATAACAACCCTGAAAGTTGCATGGGGATACCTCCTCTTGCAGATCTTAGAGGTGGTGGTTGTGATAACTTGGCTAATCAAGCTGATTTTGGTAGTTTTGATAAGGGAATGGGGATACCATCACCTGAATATTCCAGTGGTGGTTTTGATGCATCATTTTTTCAAGACAATTTGGAAAATTTTGATAGTATCATGGAGATACCATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTCCTCGAGGAAATCTGGAGAATTTTATTAACAATATAGGTAGCAACATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTGGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGGTAGCAACACAAGAATACTACCACATGAAAATCTGAATGGGAATGTTGATTCGTTGCCTCCTCAAAAAAAATTTGAAGGTCAAGAAAACTTTAGAGGTTTTGATGACAACACAGGTAGCGGCATGTGGATACCACATAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTTGAAAGCCAATTTAACTTTGAAGATGTTGATAACAACTCAGGTTCTGGTGTTGGTGATGTTGATGTGCTGTCTCATCAAGGAAATTTTGGAGTTCAAGAAAACTTTAGAGGTTTTGATGATAATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGACTTTTCATCAAAACAACTTTGGTGGCAATATTAATGGAGATGGGATGTGGAGTTTCAATGCAAACTTTGTTGACAATAATTACGGGAGCAACTTCAACCCTGAATTTCCATCGGAATAA 1512 0.3704 MTRIRKKKITSKLIENNTRRKAVYKRRLKGLFTKMKHVTILCGIEACAVVFGPGDTKPSIWPSPTVAEDLITKFESMSLDVQSKNKTDQLTFLKDKGKKLEASLEKINKENEETLMGAYLHQIENEGKSLNDFDHDVQNRLIAFTLEKIKITRKMSRHLEKEILPLNNPPPPLAPISFTLDNGDGVNMYGHVSNQQPLSDLVKKVDQMSSGFNNNPESCMGIPPLADLRGGGCDNLANQADFGSFDKGMGIPSPEYSSGGFDASFFQDNLENFDSIMEIPSHENHSGSVHDMFLPRGNLENFINNIGSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDITGSNTRILPHENLNGNVDSLPPQKKFEGQENFRGFDDNTGSGMWIPHSGGDTLLPQENFESQFNFEDVDNNSGSGVGDVDVLSHQGNFGVQENFRGFDDNTCSNMWKPPHENPSNGGVDMMTFHQNNFGGNINGDGMWSFNANFVDNNYGSNFNPEFPSE* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3320 503 Coils Coil 90 113 - -
Mtr7g3320 503 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Mtr7g3320 503 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 8 232 - -
Mtr7g3320 503 SUPERFAMILY SRF-like 6 97 IPR036879 GO:0003677|GO:0046983
Mtr7g3320 503 Gene3D - 16 100 IPR036879 GO:0003677|GO:0046983
Mtr7g3320 503 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 54 IPR002100 GO:0003677|GO:0046983
Mtr7g3320 503 PANTHER MADS BOX PROTEIN 8 232 - -
Mtr7g3320 503 CDD MADS_SRF_like 6 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr7g3320 503 ProSiteProfiles MADS-box domain profile. 4 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3320 Mtr-Chr7 50372526 50374037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3320 6 215 Type I MADS-box Gene Family AT1G65300 29.778 1.35e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr7g3320 SRF-TF 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3320 - - mtr:MTR_4g019670 880.552