Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3318 ATGGCTATGCAAACTGTTTATCTGAAAGAACATGAAGGAATTGCACACAATTTTGTGGGGCAATTATCATCTGGTACTAATAATTCAGCTGCTGCACCATGGTGGAGTGGTTTTGGATCTCAATCCCTTTATGGTGAGTCTGGTGGCCAAATCAAATCCTTTTCATTGGAGCCACCTATGTCTGTTGTTGACCAACTTGCTTCAAGTAAGCAATCTGCTAGAGGAACTGAACATGTGTTTGGAAAAGGGCATACCAATCACTTTACCATCTTTCCAGATGATTTTAAGATGTCAGGTGATGCACAAAAGCCTCATACAGCCATATCATTGCAGTCGGCAGTCCCTGATACCCCGAATCGCTTTGAGCTGGGATTTGGTCAACCTATGATCTGTACAAAGTATCCTTATGCAGATCAATTTTATGGACTCATCTCAACCTATGGACCTCAAATTCAAGGACGTATTATGCTGCCCCTTAACATGACATCTGATGATGGACCGATTTATGTGAATGCTAAGCAATACAATGGAATCATTAGACGCCGGCAGTCCCGCGCCAAAGCTGTACTTGGTCACAAATTGATTAAACGTAACAAGCCCTACATGCACGAGTCACGCCATCTCCATGCAATGCGGCGACCGAGAGGATGTGGTGGTCGTTTCTTAAACACAAAGAAATCTGCCAATGGAGATGGTAAAACTGGAAGTAAAGTGCATAAATTCGGCGGTCAACAATTGCAGTTCAGTGGTTCTCAGAGTTCTGAACTCCTTGAATCTGATGTTGGAACTTTAAACTCTTCAAAGGAAACTAATGGAAGCAGTCCAAATATTTCTGGATCAGAGGTGACTAGTTTGTATTCGAGGGGAAATCATGACAGCTTTACCGTCGATCACCTTGGATCTTCTGTCCTCTCTATGGCAGACATGATCGATGGTGGGCGTGGTGTTATCATGCCGACCAAATGGGTTGCAGCTGGCAACTGCTGTAACCTTAAAGCTTGA 1002 0.4361 MAMQTVYLKEHEGIAHNFVGQLSSGTNNSAAAPWWSGFGSQSLYGESGGQIKSFSLEPPMSVVDQLASSKQSARGTEHVFGKGHTNHFTIFPDDFKMSGDAQKPHTAISLQSAVPDTPNRFELGFGQPMICTKYPYADQFYGLISTYGPQIQGRIMLPLNMTSDDGPIYVNAKQYNGIIRRRQSRAKAVLGHKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKKSANGDGKTGSKVHKFGGQQLQFSGSQSSELLESDVGTLNSSKETNGSSPNISGSEVTSLYSRGNHDSFTVDHLGSSVLSMADMIDGGRGVIMPTKWVAAGNCCNLKA* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3318 333 ProSiteProfiles NF-YA/HAP2 family profile. 164 224 IPR001289 GO:0003700|GO:0006355
Mtr7g3318 333 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 332 - -
Mtr7g3318 333 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 221 IPR001289 GO:0003700|GO:0006355
Mtr7g3318 333 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 332 IPR001289 GO:0003700|GO:0006355
Mtr7g3318 333 MobiDBLite consensus disorder prediction 213 284 - -
Mtr7g3318 333 Gene3D - 164 226 - -
Mtr7g3318 333 SMART cbf3 163 224 IPR001289 GO:0003700|GO:0006355
Mtr7g3318 333 PRINTS CCAAT-binding transcription factor subunit B signature 167 189 IPR001289 GO:0003700|GO:0006355
Mtr7g3318 333 PRINTS CCAAT-binding transcription factor subunit B signature 198 221 IPR001289 GO:0003700|GO:0006355
Mtr7g3318 333 MobiDBLite consensus disorder prediction 240 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3318 Mtr-Chr7 50336822 50340956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3318 1 332 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.286 8.06e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mtr7g3318 CBFB_NFYA 8.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3318 K08064 - gmx:100527677 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3318 7 50336822 50340956 Mtr1g1928 1 28605424 28608861 PCT