Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3317 ATGGCTACTTCAACAGCTTATGTTTCATCTTCAATCTTCAATAGAATCAACAACCTCTCATTCACACACTCTTCCATTTCTCTCACCACCACCAACTTCCCTCAAACACCCATTTCCCATAAACCCTTCAATCTCACCCTCAAGTCTCAAAGTTTTATTCTTTCATCTCTCCCACTTCAATCTCTTCACCCTCCATTTGTTGCCACAGATGAATTTGAAACATCTCAAGACACCATTATTTCCCAACAACAAGAACCAGAACCAGAAACCTCTGATAAACCAAAGCAAGATGAAGAACAGAAAGTAACAACCTCAGACGATGCTGGAAGACTCTATGTTGGAAATTTGCCGTTTTCAATGACTTCTTCACAATTGGCTGATATATTTGCAGAAGCTGGCACAGTTGTGTCTGTTGAGATTGTCTATGATCGACTTACCGACAGAAGCAGAGGATTTGCATTTGTTACGATGAAAAGTGCTGAAGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGAGTGCTAAGGTAAACTTTCCAGAAGTGCCAAAAGGAGGTGAAAGGTTAGTAATGGGGCAAAAAGTAAGGAACAGCTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGGAATGAACTCTCAGGATCTTAGAGATGCCTTTGATGAACAGCCGGGCTTATTGGGTGCTAAGATCATCTATGAGAGGGACAATGGAAGATCTCGGGGTTTTGGATTTGTCACTTTTGAAACTGCTGAGCATTTAGAGGCTGCTTTGAACGCCATGAACGGTGTGGAGGTTCAAGGCAGGCCATTGCGATTGAATTTGGCTGCAGCGAGGACATCTCCATCTCCTCCAGTAATTGAAGAAAATACAAAAAACAACATTGAAAGCTCGGAATTGGTGTCTAGTGCCAGCACGTGA 957 0.4274 MATSTAYVSSSIFNRINNLSFTHSSISLTTTNFPQTPISHKPFNLTLKSQSFILSSLPLQSLHPPFVATDEFETSQDTIISQQQEPEPETSDKPKQDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAAARTSPSPPVIEENTKNNIESSELVSSAST* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3317 318 MobiDBLite consensus disorder prediction 291 318 - -
Mtr7g3317 318 CDD RRM_HP0827_like 110 186 - -
Mtr7g3317 318 MobiDBLite consensus disorder prediction 73 87 - -
Mtr7g3317 318 MobiDBLite consensus disorder prediction 296 318 - -
Mtr7g3317 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Mtr7g3317 318 SUPERFAMILY RNA-binding domain, RBD 105 186 IPR035979 GO:0003676
Mtr7g3317 318 PANTHER OS02G0815200 PROTEIN 3 299 - -
Mtr7g3317 318 Gene3D - 198 296 IPR012677 -
Mtr7g3317 318 Gene3D - 68 197 IPR012677 -
Mtr7g3317 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Mtr7g3317 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Mtr7g3317 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Mtr7g3317 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Mtr7g3317 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Mtr7g3317 318 MobiDBLite consensus disorder prediction 88 105 - -
Mtr7g3317 318 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 299 - -
Mtr7g3317 318 SUPERFAMILY RNA-binding domain, RBD 209 293 IPR035979 GO:0003676
Mtr7g3317 318 MobiDBLite consensus disorder prediction 73 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3317 Mtr-Chr7 50333447 50335711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3317 96 288 Eukaryotic Initiation Factors Gene Family AT3G16380 32.995 5.95e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3317 - - gmx:100814852 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3317 7 50333447 50335711 Mtr7g3317 7 50333447 50335711 ECH
Mtr7g3317 7 50333447 50335711 Mtr1g1417 1 17459568 17462374 PCT