Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3315 ATGAACGACTTACTCTCCGGTGATAACAACCACCACCACATCATCCAGATGGCGGAAACCTACACCGCGCCGGTGCAAACCCTAGAAAAATTCTTCCAAGAAGTGGAATCGCTAAAAGAAGAACTAAAAACGTTAGAAAAACTCCACACAAGCCTCAAAAACTCACACGAAAAGAGCAAAACCCTACACAGCGCACAAGCGGTGAAGGAGCTTCGTTCTGCCATGGATTCCGACGTTACTATCTCTCTGAAGAAAGCGAGACTCATTAAGGTTCGGTTGGAGTCGCTTGACCGGTCTAACGAAGCAAGCCGGAGTTTGCCGGACTGTGGACCGGGTTCATCCTCGGATCGAACACGGTTGGCGGTGGTGAGTGGTTTGAGGAAGAATTTGAAAGATTCGATGGAGAGTTTTAATGGACTTAGGGAGCAGATATCGTCGGAGTATAGAGAGACGGTGAAACGGAGATACTTTGCTGTTAATGAAGAGAAGGCAGATGATAAAACCGTTGACCTCCTCATCTCTACTGGTGAGAGCGAAACATTTTTACAGAAAGCCATCCAAAAGCAAGGGAGAGCAACAATGATGGAGAAAATACAGGAGATTGAGGAGAGACATGGTGCAGTGAAAGAGATAGAGAGAAATCTAAAAGAGCTGCATCAAGTGTTTCTGGACATGGCAGTTTTGGTCCAATCCCAAGGTGAAGAGTTGAATGACATTGAGAGCCAAATGATGCGAGCAAATTCGTATGTTAGAGGAGGAGTACAACAATTACATGTTGCTAGGAAAAATCAAAAGAATACCCGTGAATGGACATGTTTTGCCATTTTACTACTCCTAATTATTGCTTTGGTTATAATCCTCCCTATTGTTTTAAAAAATAATTAG 885 0.4373 MNDLLSGDNNHHHIIQMAETYTAPVQTLEKFFQEVESLKEELKTLEKLHTSLKNSHEKSKTLHSAQAVKELRSAMDSDVTISLKKARLIKVRLESLDRSNEASRSLPDCGPGSSSDRTRLAVVSGLRKNLKDSMESFNGLREQISSEYRETVKRRYFAVNEEKADDKTVDLLISTGESETFLQKAIQKQGRATMMEKIQEIEERHGAVKEIERNLKELHQVFLDMAVLVQSQGEELNDIESQMMRANSYVRGGVQQLHVARKNQKNTREWTCFAILLLLIIALVIILPIVLKNN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3315 294 ProSitePatterns Syntaxin / epimorphin family signature. 204 244 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr7g3315 294 SUPERFAMILY t-snare proteins 28 253 IPR010989 GO:0016020|GO:0016192
Mtr7g3315 294 Pfam SNARE domain 236 286 IPR000727 -
Mtr7g3315 294 Gene3D - 25 158 - -
Mtr7g3315 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Mtr7g3315 294 Coils Coil 28 55 - -
Mtr7g3315 294 SMART tSNARE_6 193 260 IPR000727 -
Mtr7g3315 294 CDD SNARE_syntaxin1-like 198 257 - -
Mtr7g3315 294 Gene3D - 186 291 - -
Mtr7g3315 294 CDD SynN 28 185 IPR006011 GO:0016020
Mtr7g3315 294 Pfam Syntaxin 30 233 IPR006011 GO:0016020
Mtr7g3315 294 PANTHER SYNTAXIN 8 288 IPR045242 -
Mtr7g3315 294 SMART SynN_4 23 149 IPR006011 GO:0016020
Mtr7g3315 294 PANTHER SYNTAXIN-121 8 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3315 Mtr-Chr7 50326615 50328562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3315 28 272 SNARE and Associated Proteins AT3G11820 66.939 2.20e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3315 K08486 - gmx:100808718 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3315 7 50326615 50328562 Mtr1g1930 1 28618726 28621749 PCT