Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3311 ATGGATCATGATGAGGTCGAGGTTCCTTCATTCTTTGTCTGCCCCATATCATTAGAAATCATGAAGGATCCGGTAACAGTCTCAACAGGTATAACCTACGATAGAGAAAGTATTGAAAAATGGCTATTTTCGAAGAAAAACATGACATGTCCTGTTACAAAACAACTGCTATCAGATTACACTGATCTAACAACACCAAACCACACTCTTAGAAGACTCATTCAAGCTTGGTGTACATTAAACGCTTCACAAGGCATTGAAAGGATTCCAACTCCAAAACCACCAATCAACAAAACCCAAATCACAAAACTCATCAAAGAAGCTTCTCATTCATCTCTCACTGTGCAACTTAAATGCCTGAAAAGACTTAGATCTATGGCTTCTGGAAGTGAAACAAACAAACGTTGCATTGAAGATGCAGGTGCTGTTGAGTTTATAGCTTCTATTGTAATAAACAATAGTTGCAACATTGACTTTGTTAACAACTCTGGATCTTTATCAGAGACTAACACTGTTGATGAAGCATTAAGCATACTTCATAATCTTCATGTGTCTGAAGCTGGATTGAAAAAACTACTGGCTTTTAGAAACGGCGAATTTATTGAATCCTTAACAAAAGTTATGCAGAAAGGTTTCTTTGAGTCAAGAGCTTATGCAGTTTTCTTATTAAAATCTATGTCAGAAGTAGCTGAACCAGTGCAGTTACTACATCAAAAAATTGAGTTGTTCGTTGAATTGGTTCAAGTTTTGAAGGATCAAATATCACAGAAAGTATCAAAAGCAGCACTTCAGACCCTAATTGCACTCTGTCCATGGGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTTCTGATAGAACTTCTGTTAGAAAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTGTTGGAGAATCTTTGTCAGTGTGCTGAAGGAAGAGCTGAACTTTTGAGACATGCAGCAGGTCTTGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCGACACTTGCGAATGATAGGGCTGTAAGGATTCTGTTGTCTGTTTCAAGATTCTCTGCAACTCCTAATGTTGTTCAAGAAATGCTTAAACTTGGTGTTGTGGCTAAGCTTTGTTTGGTTCTTCAAGTTGATTGTGGAAGTAAGACTAAGGAGAAAGCAAGGGAGATACTTAAGATGCATGCTAGGGCATGGAGGAATTCTCCATGCATACCTAGTAATTTGCTTTCTTCATACCCCAATTATGAGTGA 1266 0.3768 MDHDEVEVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLFSKKNMTCPVTKQLLSDYTDLTTPNHTLRRLIQAWCTLNASQGIERIPTPKPPINKTQITKLIKEASHSSLTVQLKCLKRLRSMASGSETNKRCIEDAGAVEFIASIVINNSCNIDFVNNSGSLSETNTVDEALSILHNLHVSEAGLKKLLAFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHQKIELFVELVQVLKDQISQKVSKAALQTLIALCPWGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLENLCQCAEGRAELLRHAAGLAVVSKKILRVSTLANDRAVRILLSVSRFSATPNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARAWRNSPCIPSNLLSSYPNYE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3311 421 SUPERFAMILY RING/U-box 3 82 - -
Mtr7g3311 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 418 - -
Mtr7g3311 421 SMART Ubox_2 11 77 IPR003613 GO:0004842|GO:0016567
Mtr7g3311 421 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Mtr7g3311 421 Pfam U-box domain 8 79 IPR003613 GO:0004842|GO:0016567
Mtr7g3311 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Mtr7g3311 421 CDD RING-Ubox_PUB 12 55 IPR045210 -
Mtr7g3311 421 Gene3D - 95 408 IPR011989 -
Mtr7g3311 421 ProSiteProfiles U-box domain profile. 7 84 IPR003613 GO:0004842|GO:0016567
Mtr7g3311 421 SUPERFAMILY ARM repeat 100 397 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3311 Mtr-Chr7 50273852 50275545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3311 1 418 U-box Gene Family AT3G52450 59.226 7.39e-180 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3311 - - gmx:100811258 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3311 7 50273852 50275545 Mtr7g3311 7 50273852 50275545 ECH
Mtr7g3311 7 50273852 50275545 Mtr1g1945 1 28810140 28811767 PCT
Mtr1g1944 1 28802681 28804306 Mtr7g3311 7 50273852 50275545 PCT