Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3245 ATGGATCCATTAAGCCCTGCAGTCATTGTCAATGCAGAACTGTTGCCCTTTTATGTCGGAAGAAGGGTTCGTACAGTGATGCAGGTTGTGCGATCTGACGTTCTAGCTGTCATTGGAAAATCACCAGATGAGAAGCAGTTGATTGTAAAAGGATCACCCCCTGCTCCTCTTACAAGTTTTGTAGAAGTTATTGGTATTGTTAACAGTGACAAGTCCATCAAAGCTGAGTTATGGACCAACTTTGGTGATGAAATTGATATGCTCAGCTACCATAAGCTATGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTGTGA 321 0.4174 MDPLSPAVIVNAELLPFYVGRRVRTVMQVVRSDVLAVIGKSPDEKQLIVKGSPPAPLTSFVEVIGIVNSDKSIKAELWTNFGDEIDMLSYHKLCQLANGEFKHLFL* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3245 106 SUPERFAMILY Nucleic acid-binding proteins 6 105 IPR012340 -
Mtr7g3245 106 Pfam Replication factor A protein 3 6 102 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr7g3245 106 Gene3D - 4 106 IPR012340 -
Mtr7g3245 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Mtr7g3245 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Mtr7g3245 106 CDD RPA3 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3245 Mtr-Chr7 49533490 49535575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3245 1 106 Core DNA Replication Machinery Family AT4G18590 59.434 1.62e-47 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3245 K10740 - gmx:100306641 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3245 7 49533490 49535575 Mtr7g3245 7 49533490 49535575 ECH
Mtr7g3245 7 49533490 49535575 Mtr1g2513 1 36006449 36014780 PCT