Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3242 ATGCCCGGGACAAGACAAAAAGATGCAACGGCCCGAAATTCAGAGTCACCAGGGGGAAACAGTGAACCTGAAAAACCCACAGATTCTGGTGAGCAGGTAGATCTTGATGGGGACAATGATCAAGAGGAATCAAGCGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAGGAGGAAGAAGAGGAAGAAGTAGAGGAAGAGAGTAAGCCCTTAGATGAAGAAGATGAGGCTGACAAAAAGAAACACGCTGAGCTTCTTGCGCTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCACGAAACTTCTGAAAAAGATTTAAGGGTCTTTTGTCAATCTGTGGGAGAAGTGGCAGAGGTAAGGGTTATGAAGGGGAAAGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTAGCATCCAAGGCTCTCAAGGAGCTGAACAACTCTGAATTCAAGGGAAGAAAAATAAAGTGCTCACCATCTCAAGTTAAACATCGGTTATTCATTGGTAGTGTTCCTAAAGAGTGGACTGTAGAAGATATGAAGAAGGTTGTTGCCAAGGTTGGCCCTGGAGTCATTTCGGTGGAATTGTTGAAGGATCCACAAAGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCAAACTTTAAACTTGACAATAACGATGCAATAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCATCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAAATATAACTCAGAATCGTCTTAAAGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTAATGGTCAAACTTTGGAATGCTCACTTGCTAAGCCACAAGCAGATCAGAAGTCATCTGGTGCATCAAATTCATTCAACTCTGCTGTACTTCCTGCGTATCCACCTCCTCTTGGTTATGGTATGGTTGGAGGTGGATATGGTGCTGTTGGTGCAGGATATGGTGCTGCTGGCTTTGCACCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGACAATGATGCCAATGCTTTTACCGGATGGAAGGATTGCATATGTATTGCAACAGCCAGGTTTGCAACAGCCAAGCTTTCAACAGCATGCTCCATCACCAGTATCCCGGCATGGTAGGAGTAGTGGTGTCAGCTCAAGTGGTGAAAAACGCAGTAACGATAATAGCCGTAATCGTGGTCATTGCCGATATAATCCTTACTAA 1434 0.44 MPGTRQKDATARNSESPGGNSEPEKPTDSGEQVDLDGDNDQEESSEEEVEYEEVEVEEEVEEEEEEEEEEEVEEESKPLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPGLQQPSFQQHAPSPVSRHGRSSGVSSSGEKRSNDNSRNRGHCRYNPY* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3242 477 Gene3D - 179 259 IPR012677 -
Mtr7g3242 477 SMART rrm1_1 273 346 IPR000504 GO:0003723
Mtr7g3242 477 SMART rrm1_1 179 256 IPR000504 GO:0003723
Mtr7g3242 477 SMART rrm1_1 102 172 IPR000504 GO:0003723
Mtr7g3242 477 SUPERFAMILY RNA-binding domain, RBD 266 357 IPR035979 GO:0003676
Mtr7g3242 477 MobiDBLite consensus disorder prediction 33 80 - -
Mtr7g3242 477 MobiDBLite consensus disorder prediction 433 461 - -
Mtr7g3242 477 MobiDBLite consensus disorder prediction 1 87 - -
Mtr7g3242 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Mtr7g3242 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 170 IPR000504 GO:0003723
Mtr7g3242 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 247 IPR000504 GO:0003723
Mtr7g3242 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Mtr7g3242 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 176 IPR000504 GO:0003723
Mtr7g3242 477 PANTHER - 13 475 - -
Mtr7g3242 477 Coils Coil 44 82 - -
Mtr7g3242 477 MobiDBLite consensus disorder prediction 7 26 - -
Mtr7g3242 477 CDD RRM_SF 103 172 - -
Mtr7g3242 477 Gene3D - 261 392 IPR012677 -
Mtr7g3242 477 SUPERFAMILY RNA-binding domain, RBD 98 261 IPR035979 GO:0003676
Mtr7g3242 477 SMART rrm2_1 102 172 IPR003954 GO:0003676
Mtr7g3242 477 PANTHER GEO13361P1-RELATED 13 475 - -
Mtr7g3242 477 Gene3D - 26 178 IPR012677 -
Mtr7g3242 477 MobiDBLite consensus disorder prediction 433 477 - -
Mtr7g3242 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3242 Mtr-Chr7 49504661 49510787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3242 103 433 Eukaryotic Initiation Factors Gene Family AT1G49760 23.098 5.78e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3242 K13161 - gmx:100798476 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3242 7 49504661 49510787 Mtr7g3242 7 49504661 49510787 ECH